Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 536 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2
Score = 125 bits (314), Expect = 5e-33
Identities = 85/322 (26%), Positives = 159/322 (49%), Gaps = 2/322 (0%)
Query: 3 LKKHITTSASSSFSPSNHSTSANAPKKEADDLRRQARTLARKQQAAERVASATAELLAG- 61
L IT +++ + N + D +A L R + T + ++G
Sbjct: 205 LTNSITKPIANALDAAEEIAKGNLTRPITVDGSDEAGRLLRAMSTMQEKLRDTLQRISGS 264
Query: 62 LEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKL 121
+ +SA +L S ++ A G + ++ +Q+ TAV++M + + E A A + +
Sbjct: 265 ATQLASAAEELNSVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTSEASKNA 324
Query: 122 EQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLA 181
D + + E VS ++ S + + L++++ I + + +ADQTNLLA
Sbjct: 325 TTSAGDGRDLVQETVSAIERMSADVQSTAALIGNLADESRDIGKVLDVIRGLADQTNLLA 384
Query: 182 LNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSS 241
LNAAIEA RAG+ G+GFAVVAD VR LA + +++ + IE +I I +G E + +++S+
Sbjct: 385 LNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQSGTEHAVDSMRNST 444
Query: 242 QKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQ-AA 300
++AES + L I +V++ + + V+ AA+E + A + ++ +
Sbjct: 445 ERAESTLNIARGAGMSLDTINTAIVEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSV 504
Query: 301 QEQSAACEESLKSLDQQQIALD 322
Q + A + S S + ++A+D
Sbjct: 505 QSATGANQTSAASAELSRLAVD 526
Score = 99.4 bits (246), Expect = 4e-25
Identities = 119/561 (21%), Positives = 243/561 (43%), Gaps = 80/561 (14%)
Query: 69 MTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDI--- 125
M+++R+S E IA + S ++ +N F S ++L E DI
Sbjct: 29 MSKIRTSGENIA----------QNSVPSIKALNEFTQLTLRLRVLSYRLLVNREPDIQQK 78
Query: 126 -VDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVK---QVIHIADQTNLLA 181
D+ + ++ + QT+ E+ +I S++ A + V+ Q + ++ L+
Sbjct: 79 TYDLVEQRSQQIRAAQTTYEK-------LISASDERAAYDQLVQLLGQYRQLEERMKTLS 131
Query: 182 LNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSS 241
N ++ RA + + L ++ A I+ L++ + AE ++ G
Sbjct: 132 RNNQVDELRALLNTE-----------LLSNSDAINAAIDRLVEINNLQAEALNKGAAQQY 180
Query: 242 QKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQ 301
A + V ++ LTL+ A + S+++
Sbjct: 181 SSAFNWVVTLLLIATGLTLL--------------------------FAWLLTNSITKPIA 214
Query: 302 EQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAG 361
A EE K + I +DG+ A + L ++ D + + ++ +A +L++
Sbjct: 215 NALDAAEEIAKGNLTRPITVDGSDEAGRLLRAMSTMQEKLRDTL---QRISGSATQLASA 271
Query: 362 IEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQ-IEQGARLGKERAESSLKACEK 420
EE+N ++E L Q ++ + A T + +T +E+ AR A S+ +A +
Sbjct: 272 AEELNSVTDESARGLTQQNNEIEQAA----TAVNEMTSAVEEVAR----NAVSTSEASKN 323
Query: 421 MLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAML 480
T + + V E + AI + + N+ SR I K++D I ++ QT +L
Sbjct: 324 ATTSAGDGRDLVQETVSAIERMSADVQSTAALIGNLADESRDIGKVLDVIRGLADQTNLL 383
Query: 481 AVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQ---EQINIVRKDL 537
A+N A+EAARAGE G+GFAVV+ +++ LA+ ++ +I+ + +IQ E ++
Sbjct: 384 ALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQSGTEHAVDSMRNS 443
Query: 538 ADILSTVMEEAQKAALTIKQLD----NVRSRMSDVVLGSKRISESAGGIERSIADARAGM 593
+ + + A+ A +++ ++ + R + ++ ++ A ++R++ + R
Sbjct: 444 TERAESTLNIARGAGMSLDTINTAIVEINERNLVIASAAEEQAQVAREVDRNLVNIRDLS 503
Query: 594 QQIATAAEESSHATGEAATAA 614
Q AT A ++S A+ E + A
Sbjct: 504 VQSATGANQTSAASAELSRLA 524
Score = 51.6 bits (122), Expect = 9e-11
Identities = 91/454 (20%), Positives = 183/454 (40%), Gaps = 78/454 (17%)
Query: 34 LRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQL----RSSMEQIAVG-AEESSS 88
L + +TL+R Q E A ELL+ + ++A+ +L E + G A++ SS
Sbjct: 123 LEERMKTLSRNNQVDELRALLNTELLSNSDAINAAIDRLVEINNLQAEALNKGAAQQYSS 182
Query: 89 ATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQND 148
A T + A T S +TK + +D A +I + + + ++
Sbjct: 183 AFNWVVTLLLIATGLTLLFAWLLTNS---ITKPIANALDAAEEIAKGNLTRPITVDGSDE 239
Query: 149 SVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTL 208
+ + + +S K+ D ++++ A Q A A+ + ++
Sbjct: 240 AGRLLRAMSTMQEKLRDTLQRISGSATQ---------------------LASAAEELNSV 278
Query: 209 AEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDL 268
+++ + + I+ + +++ V+ ++ A S + +K T + DL
Sbjct: 279 TDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTSE----ASKNATTSAGDGRDL 334
Query: 269 VKD--SEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQ--IALDGA 324
V++ S + +AD S+AA+I ES + ++ L Q +AL+ A
Sbjct: 335 VQETVSAIERMSADVQSTAALIGNLADES------RDIGKVLDVIRGLADQTNLLALNAA 388
Query: 325 VTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQ 384
+ AA++ ++ A A+E+ A +S++EI + I SG +
Sbjct: 389 IEAARA--------------GEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQSGTE 434
Query: 385 HMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTK 444
H S+ R ERAES+L + G + T++ I+ I E
Sbjct: 435 HAVDSM--------------RNSTERAESTL----NIARGAGMSLDTINTAIVEINERNL 476
Query: 445 AATENLNEMANIERISRQIDKIVDGISNVSIQTA 478
E A +++R++D+ + I ++S+Q+A
Sbjct: 477 VIASAAEEQA---QVAREVDRNLVNIRDLSVQSA 507
Score = 35.8 bits (81), Expect = 5e-06
Identities = 41/190 (21%), Positives = 86/190 (45%), Gaps = 23/190 (12%)
Query: 449 NLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNL 508
N ++N + I+ ID++V+ I+N +Q L A + + A + +++T + L
Sbjct: 144 NTELLSNSDAINAAIDRLVE-INN--LQAEALNKGAAQQYSSAFNWVVTLLLIATGLTLL 200
Query: 509 ANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDV 568
N+ I + N + + K TV + + +A ++ + ++ ++ D
Sbjct: 201 FAWLLTNS--ITKPIANALDAAEEIAKGNLTRPITV-DGSDEAGRLLRAMSTMQEKLRDT 257
Query: 569 VLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAI 628
+ +RIS SA Q+A+AAEE + T E+A QQ++ + A+A+
Sbjct: 258 L---QRISGSA--------------TQLASAAEELNSVTDESARGLTQQNNEIEQAATAV 300
Query: 629 ENIAAVADEL 638
+ + +E+
Sbjct: 301 NEMTSAVEEV 310