Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  125 bits (314), Expect = 6e-33
 Identities = 79/273 (28%), Positives = 143/273 (52%), Gaps = 4/273 (1%)

Query: 45  QQAAERVASATAELLAGLEES----SSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQM 100
           QQ  +R+ +   +L+ G+ +     +SA  +L +  EQ + G     + T Q  TA+ +M
Sbjct: 348 QQGIQRMGTTLRDLIGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKTETDQVATAMQEM 407

Query: 101 NNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQA 160
           +  ++E A  A Q+  + ++ +         + + +  ++  +     SV  M EL +++
Sbjct: 408 SATVHEVARNAEQACTVASEADAQARIGDQVVAQAIVQIERLASEVGRSVDAMDELEQES 467

Query: 161 AKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIE 220
           A+I   +  +  +A+QTNLLALNAAIEA RAG  G+GFAVVAD VR LA++ + +   IE
Sbjct: 468 ARIGKIMDVIRAVAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRGLAQRTQHSTEEIE 527

Query: 221 SLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAAD 280
           SL+  + NG   VS+ +++S +  +S V+        L  I   +  +   ++ +  AA 
Sbjct: 528 SLVAGLQNGTRQVSSIMRNSRELTDSSVELAGKAGISLGNITQAVSGIQAMNQQIAAAAV 587

Query: 281 EMSSAAVIALKGSESVSQAAQEQSAACEESLKS 313
           + SS A    +   +V   +++ ++A EE+  S
Sbjct: 588 QQSSVAEEISRSILNVRDVSEQTASASEETAAS 620



 Score =  116 bits (290), Expect = 4e-30
 Identities = 129/597 (21%), Positives = 271/597 (45%), Gaps = 79/597 (13%)

Query: 43  RKQQAAERVASATAELLAGLEESSS----AMTQLRSSMEQIAVGAEESSSATKQSETAVS 98
           +K  A E       + LA +E++S+    A+  +R +    A   +E      +    ++
Sbjct: 90  QKSLANELKKPENLKKLALIEQASTEYQVALNTMREAYRTDAAMRKEMGVNAVKGAALIA 149

Query: 99  QMNNFINEQATYATQSKQ-----ILTKLEQDIVDVANKINEMVSNVQTSSE----RQNDS 149
           ++ N +  +A  AT  ++     I+ K ++D+  V  ++     N  +++E    RQ ++
Sbjct: 150 KVINDV--EAMPATDERRFELYRIILKAKEDVALVRYEVRGYTGNPNSATEQAATRQLEN 207

Query: 150 VKRMIELSEQA--AKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRT 207
             + IE    A      D +KQ+     +T L+A   +++   A     G AV  DT+  
Sbjct: 208 ALKSIETLNGAFGPSYADTIKQL-----ETALIAYRRSVQNFTASNQAIGKAV-QDTI-D 260

Query: 208 LAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVD 267
           L E   +        + D    +++VS G +S    A+S + +  +    L ++   +  
Sbjct: 261 LGETITR--------LTDEMYASQLVSLGDES----AQSRILQ--LSCTALAMLLGILAA 306

Query: 268 LVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTA 327
           ++   ++     D +   AV+    +  ++Q                D+  +   G    
Sbjct: 307 MIITRQITRPLQDTL---AVVDRIAAGDLTQGTVVTRG---------DELGVLQQGIQRM 354

Query: 328 AQSLDELTDELRTS-TDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHM 386
             +L +L   +R   T I  ++EE++A  E+ SAG+      ++++  A+ ++S+    +
Sbjct: 355 GTTLRDLIGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKTETDQVATAMQEMSATVHEV 414

Query: 387 AKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAA 446
           A++ E   T  ++ +  AR+G +    ++   E++ + +  +   +DE+           
Sbjct: 415 ARNAEQACTVASEADAQARIGDQVVAQAIVQIERLASEVGRSVDAMDEL----------- 463

Query: 447 TENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQ 506
                     E+ S +I KI+D I  V+ QT +LA+N A+EAARAG+ G+GFAVV+ +++
Sbjct: 464 ----------EQESARIGKIMDVIRAVAEQTNLLALNAAIEAARAGDAGRGFAVVADEVR 513

Query: 507 NLANDAAENAEQIKDQVKNIQ---EQINIVRKDLADILSTVMEEAQKAALTI----KQLD 559
            LA     + E+I+  V  +Q    Q++ + ++  ++  + +E A KA +++    + + 
Sbjct: 514 GLAQRTQHSTEEIESLVAGLQNGTRQVSSIMRNSRELTDSSVELAGKAGISLGNITQAVS 573

Query: 560 NVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQ 616
            +++    +   + + S  A  I RSI + R   +Q A+A+EE++ ++ E A    Q
Sbjct: 574 GIQAMNQQIAAAAVQQSSVAEEISRSILNVRDVSEQTASASEETAASSIELARLGNQ 630



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 586 IADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
           I   R G+ QIA+AAEE S  T + +     Q + T ++A+A++ ++A   E+
Sbjct: 362 IGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKTETDQVATAMQEMSATVHEV 414