Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  108 bits (270), Expect = 7e-28
 Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 8/236 (3%)

Query: 46  QAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFIN 105
           Q  +R+ SA+++L     ++S     +  +       A     A +   TA ++M    N
Sbjct: 367 QLMQRIGSASSDLQTAAADTSHVAQNMNDA-------AGRQRQAVELVSTAFNEMVATAN 419

Query: 106 EQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKIND 165
           E A   +Q+     +  +D+ D  + I E   +V   S+    S + M  L + +  IN 
Sbjct: 420 EVARSCSQAASSADEGYRDVHDGQHHIGEATGSVMKLSDDLQKSTQTMQALEQDSKNINT 479

Query: 166 AVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKD 225
            +  +  IA+QTNLLALNAAIEA RAG  G+GFAVVAD VR LA +   +   I+SL+ +
Sbjct: 480 ILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTGEIDSLLGN 539

Query: 226 ISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADE 281
           ++   + V+  ++SS Q +++ V++          IRN  VD ++D    +  A E
Sbjct: 540 LARRTQEVTQQMQSSLQVSQTSVERIQQARDSFDKIRNS-VDSIRDQNTQIATAAE 594



 Score = 81.3 bits (199), Expect = 1e-19
 Identities = 60/269 (22%), Positives = 128/269 (47%), Gaps = 14/269 (5%)

Query: 362 IEEINRSSNEIMGALNQISSGAQHM-------AKSVETGITSLTQIEQGARLGKERAESS 414
           ++ I  +S+++  A    S  AQ+M        ++VE   T+  ++   A         +
Sbjct: 369 MQRIGSASSDLQTAAADTSHVAQNMNDAAGRQRQAVELVSTAFNEMVATANEVARSCSQA 428

Query: 415 LKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVS 474
             + ++    + + +  + E   ++ + +    ++   M  +E+ S+ I+ I+D I +++
Sbjct: 429 ASSADEGYRDVHDGQHHIGEATGSVMKLSDDLQKSTQTMQALEQDSKNINTILDTIRSIA 488

Query: 475 IQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVR 534
            QT +LA+N A+EAARAG+ G+GFAVV+ +++ LA   A++  +I   + N+  +   V 
Sbjct: 489 EQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTGEIDSLLGNLARRTQEVT 548

Query: 535 KDLADIL---STVMEEAQKAALTIKQL----DNVRSRMSDVVLGSKRISESAGGIERSIA 587
           + +   L    T +E  Q+A  +  ++    D++R + + +   ++   + A  I R IA
Sbjct: 549 QQMQSSLQVSQTSVERIQQARDSFDKIRNSVDSIRDQNTQIATAAEEQHQVAEDINRHIA 608

Query: 588 DARAGMQQIATAAEESSHATGEAATAARQ 616
              A  Q +   A  +   +G     + Q
Sbjct: 609 QIHADAQLVEEFAHSAQTGSGRLTDISGQ 637



 Score = 25.4 bits (54), Expect = 0.008
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 596 IATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
           + TAA ++SH       AA +Q  +   +++A   + A A+E+
Sbjct: 379 LQTAAADTSHVAQNMNDAAGRQRQAVELVSTAFNEMVATANEV 421