Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2E3

 Score =  125 bits (314), Expect = 5e-33
 Identities = 85/284 (29%), Positives = 148/284 (52%), Gaps = 15/284 (5%)

Query: 40  TLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQ 99
           TL R   +A ++ASA  EL +  +ES+  +TQ  + +EQ A              TAV++
Sbjct: 262 TLQRISGSATQLASAAEELNSVTDESARGLTQQNNEIEQAA--------------TAVNE 307

Query: 100 MNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQ 159
           M + + E A  A  + +          D  + + E VS ++  S     +   + +L+ +
Sbjct: 308 MTSAVEEVARNAVSTSEASKNATTSAGDGRDLVQETVSAIERMSADVQSTATLIGDLANE 367

Query: 160 AAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANI 219
           +  I   +  +  +ADQTNLLALNAAIEA RAG+ G+GFAVVAD VR LA + +++ + I
Sbjct: 368 SRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEI 427

Query: 220 ESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAA 279
           E +I  I +G E   + +++S+++AES +         L  I + +V++ + + V+  AA
Sbjct: 428 ERMIGSIQSGTEHAVDSMRNSTERAESTLNIARGAGLSLDTINSAIVEINERNLVIASAA 487

Query: 280 DEMSSAAVIALKGSESVSQ-AAQEQSAACEESLKSLDQQQIALD 322
           +E +  A    +   ++   + Q  + A + S  S +  ++ALD
Sbjct: 488 EEQAQVAREVDRNLVNIRDLSVQSATGANQTSAASNELSRLALD 531



 Score =  102 bits (254), Expect = 4e-26
 Identities = 90/377 (23%), Positives = 183/377 (48%), Gaps = 36/377 (9%)

Query: 263 NEMVDLVKD--SEVLLKAADEMSSA---------------AVIALKGSESVSQAAQEQSA 305
           N +V++  D  ++   KAAD+ SSA                + A   + S++Q   +  +
Sbjct: 164 NRLVEINNDQAADFNQKAADQYSSAFNLVVTLLVIATGLTLLFAWLLTNSITQPIAKALS 223

Query: 306 ACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEI 365
           A EE  +    + I +DG+  A + L  +   L+    +  + + ++ +A +L++  EE+
Sbjct: 224 AAEEIAEGNLTRPIIVDGSDEAGRLLQAM---LKMQEKLRDTLQRISGSATQLASAAEEL 280

Query: 366 NRSSNEIMGALNQISSGAQHMAKSVETGITSLTQ-IEQGARLGKERAESSLKACEKMLTG 424
           N  ++E    L Q ++  +  A    T +  +T  +E+ AR     A S+ +A +   T 
Sbjct: 281 NSVTDESARGLTQQNNEIEQAA----TAVNEMTSAVEEVAR----NAVSTSEASKNATTS 332

Query: 425 IEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNG 484
             + +  V E + AI   +         + ++   SR I K++D I  ++ QT +LA+N 
Sbjct: 333 AGDGRDLVQETVSAIERMSADVQSTATLIGDLANESRDIGKVLDVIRGLADQTNLLALNA 392

Query: 485 AVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQ---EQINIVRKDLADIL 541
           A+EAARAGE G+GFAVV+ +++ LA+   ++  +I+  + +IQ   E      ++  +  
Sbjct: 393 AIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQSGTEHAVDSMRNSTERA 452

Query: 542 STVMEEAQKAALTIKQLDN----VRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIA 597
            + +  A+ A L++  +++    +  R   +   ++  ++ A  ++R++ + R    Q A
Sbjct: 453 ESTLNIARGAGLSLDTINSAIVEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSA 512

Query: 598 TAAEESSHATGEAATAA 614
           T A ++S A+ E +  A
Sbjct: 513 TGANQTSAASNELSRLA 529



 Score = 32.7 bits (73), Expect = 4e-05
 Identities = 14/44 (31%), Positives = 27/44 (61%)

Query: 595 QIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
           Q+A+AAEE +  T E+A    QQ++   + A+A+  + +  +E+
Sbjct: 272 QLASAAEELNSVTDESARGLTQQNNEIEQAATAVNEMTSAVEEV 315