Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 686 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2E3
Score = 114 bits (285), Expect = 1e-29
Identities = 90/289 (31%), Positives = 150/289 (51%), Gaps = 35/289 (12%)
Query: 54 ATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQ 113
AT L AG + ++A+ + +++ +A +E + ++ TA+++M I++ + A +
Sbjct: 398 ATINLTAG--QVAAAVQETQATAMHLAQASEHQAQQISEASTAINEMAQSIDQVSANAAE 455
Query: 114 SKQILTKLEQDIVDVANKINEMVSN----VQTSSERQNDSVKRMIELSEQAAKINDAVKQ 169
S + + V++ANK NE+V N + E+ D+ KR+ L E + +I D V
Sbjct: 456 SSAVAERS----VEIANKGNEVVHNTIHGMDNIREQIQDTAKRIKRLGESSQEIGDIVSL 511
Query: 170 VIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNG 229
+ IADQTN+LALNAAI+A AG G+GFAVVAD V+ LAE++ IE+L++ I
Sbjct: 512 IDDIADQTNILALNAAIQASMAGDAGRGFAVVADEVQRLAERSSAATRQIETLVRAIQTD 571
Query: 230 AEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIA 289
+N S ++ +EV +G L +D+ V L+ + +S
Sbjct: 572 ----TNEAVISMEQTTTEVVRG--------------ARLAQDAGVALEEIEGVSKTLAAL 613
Query: 290 LKGSESVSQAAQEQ-SAACEESLKSLDQQQIAL---DGAVTAAQSLDEL 334
+ +S+S AAQ+Q S+A + SL QQI G+ A+S+ L
Sbjct: 614 I---QSISNAAQQQTSSAGQISLTMNVIQQITTQTSSGSTATAESIGNL 659
Score = 96.3 bits (238), Expect = 4e-24
Identities = 119/633 (18%), Positives = 256/633 (40%), Gaps = 115/633 (18%)
Query: 29 KEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSS 88
K D + +T+ Q A +A +L E+ + Q + Q+A+ +S
Sbjct: 128 KNTDAILSSEQTVLSLHQVAATLAETVPQLQVEYEKVVEILLQRGAPAAQVAMAQRQSLL 187
Query: 89 ATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVS---NVQTSSER 145
A + + +N ++Q +D +N M+ +++ S
Sbjct: 188 AER--------ILGAVNTVLVGDENAQQAADAFGRDAARFGQVLNGMLQGNPSLKISEVE 239
Query: 146 QNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTV 205
+D+ R+ E+SE ++ +V +++ + +
Sbjct: 240 DHDARARLTEISELFEFVSGSVDEILETSPELF--------------------------- 272
Query: 206 RTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEM 265
K ++A NI +L + + + A ++NG ++ ++ G+V+ L L+ +
Sbjct: 273 -----KVRESAGNIFNLSQTLLDEASHLANGFENMVGGRSTDTIGGYVLGL-LALMSIIL 326
Query: 266 VDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAV 325
+ LV E + + + A++ ++ LD+ + DG +
Sbjct: 327 IGLVMVRET------------------NRQLRETAEKNERNQNAIMRLLDEIEDLADGDL 368
Query: 326 TAAQSLDE-----LTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQIS 380
T S+ E + D + S D ++ A L+AG ++ + E ++
Sbjct: 369 TVTASVTEDFTGTIADSINYSVDQLRD----LVATINLTAG--QVAAAVQETQATAMHLA 422
Query: 381 SGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAIT 440
++H A+ + T++ ++ Q A S E+ + + V I +
Sbjct: 423 QASEHQAQQISEASTAINEMAQSIDQVSANAAESSAVAERSVEIANKGNEVVHNTIHGMD 482
Query: 441 ESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAV 500
+ + + + S++I IV I +++ QT +LA+N A++A+ AG+ G+GFAV
Sbjct: 483 NIREQIQDTAKRIKRLGESSQEIGDIVSLIDDIADQTNILALNAAIQASMAGDAGRGFAV 542
Query: 501 VSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDN 560
V+ ++Q LA ++ QI+ V+ IQ N +A ++++Q
Sbjct: 543 VADEVQRLAERSSAATRQIETLVRAIQTDTN------------------EAVISMEQ--- 581
Query: 561 VRSRMSDVVLGSKRISESAG-------GIERSIADARAGMQQIATAAEESSHATGEAATA 613
++VV G+ R+++ AG G+ +++A A +Q I+ AA++ + + G+ +
Sbjct: 582 ---TTTEVVRGA-RLAQDAGVALEEIEGVSKTLA---ALIQSISNAAQQQTSSAGQISLT 634
Query: 614 -------ARQQSSSTSELASAIENIAAVADELQ 639
Q SS ++ A +I N+A +A +L+
Sbjct: 635 MNVIQQITTQTSSGSTATAESIGNLAKMASQLR 667
Score = 51.2 bits (121), Expect = 1e-10
Identities = 100/544 (18%), Positives = 200/544 (36%), Gaps = 55/544 (10%)
Query: 37 QARTLARKQQAAERVASATAELLAGLE---ESSSAMTQLRSSMEQIAVGAEESSSATKQS 93
Q R+ AER+ A +L G E +++ A + + Q+ G + + + K S
Sbjct: 177 QVAMAQRQSLLAERILGAVNTVLVGDENAQQAADAFGRDAARFGQVLNGMLQGNPSLKIS 236
Query: 94 ETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVAN---KINEMVSNVQTSSERQNDSV 150
E ++ + T ++ + ++ +I++ + K+ E N+ S+ D
Sbjct: 237 EVE----DHDARARLTEISELFEFVSGSVDEILETSPELFKVRESAGNIFNLSQTLLDEA 292
Query: 151 KRMIELSEQ--AAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTL 208
+ E + D + + LLAL + I G +V +T R L
Sbjct: 293 SHLANGFENMVGGRSTDTIGGYV-----LGLLALMSIILIG--------LVMVRETNRQL 339
Query: 209 AEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQK-GHVVNKQLTLIRNEMVD 267
E AEKN N ++++ + ++ + ++ E +N + +R+ +
Sbjct: 340 RETAEKNERNQNAIMRLLDEIEDLADGDLTVTASVTEDFTGTIADSINYSVDQLRDLVAT 399
Query: 268 LVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQI-ALDGAVT 326
+ + + A E + A+ + SE +Q E S A E +S+DQ A + +
Sbjct: 400 INLTAGQVAAAVQETQATAMHLAQASEHQAQQISEASTAINEMAQSIDQVSANAAESSAV 459
Query: 327 AAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHM 386
A +S++ + + + + ++ + I+ + SS EI ++ I A
Sbjct: 460 AERSVEIANKGNEVVHNTIHGMDNIREQIQDTAKRIKRLGESSQEIGDIVSLIDDIAD-- 517
Query: 387 AKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAA 446
+T I +L Q + G ++ A E + + E + AA
Sbjct: 518 ----QTNILALNAAIQASMAGDAGRGFAVVADE----------------VQRLAERSSAA 557
Query: 447 TENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQ 506
T + + + I ++ V + QT V GA A AG + VS +
Sbjct: 558 TRQIETL--VRAIQTDTNEAVISME----QTTTEVVRGARLAQDAGVALEEIEGVSKTLA 611
Query: 507 NLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMS 566
L + A+Q I +N++++ S A+ K +R +S
Sbjct: 612 ALIQSISNAAQQQTSSAGQISLTMNVIQQITTQTSSGSTATAESIGNLAKMASQLRRSVS 671
Query: 567 DVVL 570
L
Sbjct: 672 GFTL 675
Score = 39.3 bits (90), Expect = 6e-07
Identities = 67/312 (21%), Positives = 126/312 (40%), Gaps = 34/312 (10%)
Query: 333 ELTDELRTSTDIVKSSEEVAAAAEELSAGIEEI--NRSSNEIMGALNQISSGAQHMAKSV 390
EL ++ +I S+ + A L+ G E + RS++ I G + G + +
Sbjct: 270 ELFKVRESAGNIFNLSQTLLDEASHLANGFENMVGGRSTDTIGGYV----LGLLALMSII 325
Query: 391 ETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENL 450
G+ + + + R E+ E + A ++L IE+ LA + T A+
Sbjct: 326 LIGLVMVRETNRQLRETAEKNERNQNAIMRLLDEIED---------LADGDLTVTASVTE 376
Query: 451 NEMANI-ERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLA 509
+ I + I+ +D++ D ++ +++ +A A A + + I +
Sbjct: 377 DFTGTIADSINYSVDQLRDLVATINLTAGQVAAAVQETQATAMHLAQASEHQAQQISEAS 436
Query: 510 NDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVV 569
E A+ I DQV + + V + +I + E TI +DN+R ++ D
Sbjct: 437 TAINEMAQSI-DQVSANAAESSAVAERSVEIANKGNEVVHN---TIHGMDNIREQIQDTA 492
Query: 570 LGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIE 629
KR+ ES+ + I D I + ++ + T A A Q+S + A
Sbjct: 493 KRIKRLGESS----QEIGD-------IVSLIDDIADQTNILALNAAIQASMAGD---AGR 538
Query: 630 NIAAVADELQSI 641
A VADE+Q +
Sbjct: 539 GFAVVADEVQRL 550