Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 639 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2E3
Score = 126 bits (317), Expect = 3e-33
Identities = 79/276 (28%), Positives = 145/276 (52%), Gaps = 10/276 (3%)
Query: 45 QQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSA-------TKQSETAV 97
QQ R+ EL++G+ + +TQ+ S+ E+++ EE+S+ T Q TA+
Sbjct: 347 QQGIARMGVTLRELISGIRDG---VTQIASAAEELSAVTEETSAGVNSQKIETDQVATAM 403
Query: 98 SQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELS 157
+M + E A A ++ Q + + + +NE ++ ++ + S + M L
Sbjct: 404 HEMTATVQEVARNAEEASQAAAAADGEAREGDKVVNEAIAQIERLASEVVRSTEAMTVLQ 463
Query: 158 EQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAA 217
+++ KI + + +A+QTNLLALNAAIEA RAG+ G+GFAVVAD VR LA++ +K+
Sbjct: 464 QESDKIGSVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTE 523
Query: 218 NIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLK 277
IE L+ + NG + V+ + +S +S V+ L I + ++ ++ +
Sbjct: 524 EIEGLVAGLQNGTQQVAAVMNNSRSLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAA 583
Query: 278 AADEMSSAAVIALKGSESVSQAAQEQSAACEESLKS 313
AA++ S+ A + +V +++ +AA +E+ S
Sbjct: 584 AAEQQSAVAEEISRSIINVRDVSEQTAAASDETAAS 619
Score = 117 bits (293), Expect = 2e-30
Identities = 134/622 (21%), Positives = 276/622 (44%), Gaps = 102/622 (16%)
Query: 59 LAGLEESSSAMTQLRSSMEQIAVGAEESSSATK----------QSETAVSQMNN-----F 103
++ + + ++ +T+LR + Q + A + + A Q + +S + +
Sbjct: 46 MSDITQLNAGLTKLRVTRLQYMLAAGDETVAQTVQTALDGFKAQQQKLLSSLKSPENLKL 105
Query: 104 INEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKI 163
+NEQ T +Q L K+ V++ M N ++++ ND I
Sbjct: 106 LNEQGTVIDAYQQSLNKMRSAYRTVSSVRQTMGENAESANTLIND--------------I 151
Query: 164 NDAVKQVIHIADQT--NLLALNAAIEAGRAGKHG-KGFAVVADTVRTLAEKA----EKNA 216
+ V+Q+ ++DQ LLA+ A E + ++ +G+ +AD+ +KA +
Sbjct: 152 DTRVRQM-PLSDQRFEQLLAITEAKEQFQLARYEVRGY--IADSNPATEQKAFAQMDAAI 208
Query: 217 ANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMV----DLVKDS 272
A++++L ++ + ++S+ + +Q N + R EM D+V S
Sbjct: 209 ASLKTLNTHFADSQQDALRQLQSALLNYRNALQAYKAANNDAVVARQEMTVQGNDIVTRS 268
Query: 273 EVL----LKAADEMSSAA----------------VIALKGSESVSQAAQEQSAACEE--- 309
+ L L D S+ A + A+ + +++ +E A E
Sbjct: 269 DALYQIQLDRRDAESTQARTLQLISTVLALLVGVLAAVIITRQITRPLRETLAVVERIAG 328
Query: 310 -------SLKSLDQQQIALDGAVTAAQSLDELTDELRTS-TDIVKSSEEVAAAAEELSAG 361
+ D+ + G +L EL +R T I ++EE++A EE SAG
Sbjct: 329 GDLTHDVHVTRRDELGVLQQGIARMGVTLRELISGIRDGVTQIASAAEELSAVTEETSAG 388
Query: 362 IEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKM 421
+ ++++ A++++++ Q +A++ E + + AR G + ++ E++
Sbjct: 389 VNSQKIETDQVATAMHEMTATVQEVARNAEEASQAAAAADGEAREGDKVVNEAIAQIERL 448
Query: 422 LTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLA 481
+ + ST+A T +++ S +I ++D I V+ QT +LA
Sbjct: 449 AS--------------EVVRSTEAMTV-------LQQESDKIGSVMDVIKAVAEQTNLLA 487
Query: 482 VNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQ---EQINIVRKDLA 538
+N A+EAARAGE G+GFAVV+ +++ LA ++ E+I+ V +Q +Q+ V +
Sbjct: 488 LNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAGLQNGTQQVAAVMNNSR 547
Query: 539 DILSTVMEEAQKAALTIKQL----DNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQ 594
+ + +E +KA ++++ + N++S + +++ S A I RSI + R +
Sbjct: 548 SLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAAAAEQQSAVAEEISRSIINVRDVSE 607
Query: 595 QIATAAEESSHATGEAATAARQ 616
Q A A++E++ ++ E A Q
Sbjct: 608 QTAAASDETAASSVELARLGNQ 629
Score = 42.4 bits (98), Expect = 6e-08
Identities = 92/472 (19%), Positives = 184/472 (38%), Gaps = 85/472 (18%)
Query: 204 TVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRN 263
TV ++ + +NA + +LI DI + S Q+ E + +Q L R
Sbjct: 129 TVSSVRQTMGENAESANTLINDIDTRVRQMP----LSDQRFEQLLAITEA-KEQFQLARY 183
Query: 264 EMVDLVKDSEVLLKA-ADEMSSAAVIALKG-----SESVSQAAQEQSAACEESLKSLDQQ 317
E+ + DS + A AA+ +LK ++S A ++ +A +L
Sbjct: 184 EVRGYIADSNPATEQKAFAQMDAAIASLKTLNTHFADSQQDALRQLQSALLNYRNALQAY 243
Query: 318 QIALDGAVTAAQSLDELTDELRTSTDIV-------KSSEEVAAAAEELSAGI-------- 362
+ A + AV A Q + +++ T +D + + +E A +L + +
Sbjct: 244 KAANNDAVVARQEMTVQGNDIVTRSDALYQIQLDRRDAESTQARTLQLISTVLALLVGVL 303
Query: 363 ------EEINRSSNEIMGALNQISSGAQ----HMAKSVETGITSLTQIEQG-ARLGKERA 411
+I R E + + +I+ G H+ + E G+ ++QG AR+G
Sbjct: 304 AAVIITRQITRPLRETLAVVERIAGGDLTHDVHVTRRDELGV-----LQQGIARMGVTLR 358
Query: 412 ESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGIS 471
E +++GI + T I + E A TE + N ++I + D++ +
Sbjct: 359 E--------LISGIRDGVT----QIASAAEELSAVTEETSAGVNSQKI--ETDQVATAMH 404
Query: 472 NVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQIN 531
++ +A N A EA++A G A + + N+A E++ +V E +
Sbjct: 405 EMTATVQEVARN-AEEASQAAAAADGEA---REGDKVVNEAIAQIERLASEVVRSTEAMT 460
Query: 532 IVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARA 591
+++++ +D + +VM+ + A L + +I ARA
Sbjct: 461 VLQQE-SDKIGSVMDVIKAVAEQTNLL----------------------ALNAAIEAARA 497
Query: 592 GM--QQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQSI 641
G + A A+E + + + L + + +AAV + +S+
Sbjct: 498 GEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAGLQNGTQQVAAVMNNSRSL 549
Score = 32.3 bits (72), Expect = 7e-05
Identities = 65/346 (18%), Positives = 131/346 (37%), Gaps = 34/346 (9%)
Query: 324 AVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGA 383
A T +LD + + +KS E + E+ + I+ +S N++ A +SS
Sbjct: 76 AQTVQTALDGFKAQQQKLLSSLKSPENLKLLNEQGTV-IDAYQQSLNKMRSAYRTVSSVR 134
Query: 384 QHMAKSVETGITSLTQIEQGAR---LGKERAESSLKACE----------KMLTGIEENKT 430
Q M ++ E+ T + I+ R L +R E L E ++ I ++
Sbjct: 135 QTMGENAESANTLINDIDTRVRQMPLSDQRFEQLLAITEAKEQFQLARYEVRGYIADSNP 194
Query: 431 TVDEMILAITESTKAATENLN-EMANIERIS-RQIDKIVDGISNVSIQTAMLAVNGAVEA 488
++ A ++ A+ + LN A+ ++ + RQ+ + N ++Q A N AV A
Sbjct: 195 ATEQKAFAQMDAAIASLKTLNTHFADSQQDALRQLQSALLNYRN-ALQAYKAANNDAVVA 253
Query: 489 ARAGEYGKGFAVVSTD----IQNLANDAAENAEQIKDQVKNIQE-------QINIVRKDL 537
+ V +D IQ DA + + + + I R+
Sbjct: 254 RQEMTVQGNDIVTRSDALYQIQLDRRDAESTQARTLQLISTVLALLVGVLAAVIITRQIT 313
Query: 538 ADILST--VMEEAQKAALT----IKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARA 591
+ T V+E LT + + D + + + E GI + +
Sbjct: 314 RPLRETLAVVERIAGGDLTHDVHVTRRDELGVLQQGIARMGVTLRELISGIRDGVTQIAS 373
Query: 592 GMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADE 637
++++ EE+S Q +++ E+ + ++ +A A+E
Sbjct: 374 AAEELSAVTEETSAGVNSQKIETDQVATAMHEMTATVQEVARNAEE 419
Score = 27.7 bits (60), Expect = 0.002
Identities = 20/101 (19%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 38 ARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAV 97
A + + + T + LE + ++ ++S +QIA AE+ S+ ++ ++
Sbjct: 540 AAVMNNSRSLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAAAAEQQSAVAEEISRSI 599
Query: 98 SQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSN 138
+ + ++EQ T A + + +E + + N++ MVS+
Sbjct: 600 INVRD-VSEQ-TAAASDETAASSVE--LARLGNQLQMMVSH 636