Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  133 bits (334), Expect = 3e-35
 Identities = 86/302 (28%), Positives = 155/302 (51%), Gaps = 9/302 (2%)

Query: 21  STSANAPKKEADDLRRQARTLARK-----QQAAERVASATAELLAGLEES----SSAMTQ 71
           +T A+  +  + DL   A+   R      Q+  +++ S   EL+ G+ +     S+A  +
Sbjct: 319 TTMADVERIASGDLSETAQIQRRDELGVLQRGIQQMGSTLRELIGGIRDGVSQISAAAEE 378

Query: 72  LRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANK 131
           L +  +Q + G       T Q  TA+ +M+  + E A  A Q+    T+ + +  +    
Sbjct: 379 LSAVTQQTSAGVNSQKEETDQVATAMHEMSATVQEVARNAEQAALAATEADSEAREGDRV 438

Query: 132 INEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRA 191
           + E+V+ ++  +     S + M  L E++ KI   +  +  +A+QTNLLALNAAIEA RA
Sbjct: 439 VTEVVTQIERMASAVVRSTEAMTALQEESDKIGSVMNVIRAVAEQTNLLALNAAIEAARA 498

Query: 192 GKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKG 251
           G+ G+GFAVVAD VR LA++ +K+   IE L+  + NG + V++ + +S    +S V+  
Sbjct: 499 GEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAALQNGTQQVASIMHTSRDLTDSGVELA 558

Query: 252 HVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESL 311
                 L  I   + ++   ++ +  AA+E S+ A    +   +V   +++ +AA EE+ 
Sbjct: 559 RRAGASLGSITRTVSNIQAMNQQIAAAAEEQSAVAEEISRSVVNVRDVSEQTAAASEETA 618

Query: 312 KS 313
            S
Sbjct: 619 AS 620



 Score =  118 bits (295), Expect = 9e-31
 Identities = 140/639 (21%), Positives = 273/639 (42%), Gaps = 75/639 (11%)

Query: 10  SASSSFSPSNHSTSANAPKKEADDLRRQARTLARKQ-QAAERVASATAELLAGLEESSSA 68
           S  S    S   T  +   K   DLR     +AR Q   A   A +T  L   L    + 
Sbjct: 35  SLGSVIQRSGWMTEISLLNKTLTDLR-----IARLQFMLANGDAESTERLDKNLGIYLAQ 89

Query: 69  MTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDV 128
            TQL ++ +     A+      K+     +Q  N +N+      Q+    T ++     +
Sbjct: 90  QTQLLNTFKNPINVAQ-----LKEQAGYNAQYQNSLNDMRKAYAQANGARTTIDGAATRL 144

Query: 129 ANKINEMVSNVQTSSERQNDSVKRMIELSE---------------QAAKINDAVKQVIHI 173
                 + ++V    + + D   +++ +S+                AA  NDAVK +   
Sbjct: 145 GELTAGVTNHVLQLPDYEEDRFAQLLAISQIKEDVQRAQYLLRVYMAAPANDAVKAIYTQ 204

Query: 174 ADQTNL-LALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEM 232
            D     L  +A      +G   +    V D  R+  +  E     I    +++++  + 
Sbjct: 205 LDTAQATLGRHAGALDANSGAALQQIRTVLDEYRSAIQALETATQAIAKARQEMTDQQKE 264

Query: 233 VSNGVKSSSQ-------KAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSA 285
           +     S  Q          S+ +   +V+  L L+   +   +   +++L     M+  
Sbjct: 265 IVRISDSLYQFQLDRLDVESSDARSRLIVSTLLALVLGVLAAWLITRQIILPLRTTMADV 324

Query: 286 AVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTS-TDI 344
             IA   S  +S+ AQ Q           D+  +   G      +L EL   +R   + I
Sbjct: 325 ERIA---SGDLSETAQIQRR---------DELGVLQRGIQQMGSTLRELIGGIRDGVSQI 372

Query: 345 VKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGA 404
             ++EE++A  ++ SAG+      ++++  A++++S+  Q +A++ E    + T+ +  A
Sbjct: 373 SAAAEELSAVTQQTSAGVNSQKEETDQVATAMHEMSATVQEVARNAEQAALAATEADSEA 432

Query: 405 RLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQID 464
           R G           ++++T   E  T ++ M  A+  ST+A T        ++  S +I 
Sbjct: 433 REG-----------DRVVT---EVVTQIERMASAVVRSTEAMTA-------LQEESDKIG 471

Query: 465 KIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVK 524
            +++ I  V+ QT +LA+N A+EAARAGE G+GFAVV+ +++ LA    ++ E+I+  V 
Sbjct: 472 SVMNVIRAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVA 531

Query: 525 NIQ---EQINIVRKDLADILSTVMEEAQKAALTI----KQLDNVRSRMSDVVLGSKRISE 577
            +Q   +Q+  +     D+  + +E A++A  ++    + + N+++    +   ++  S 
Sbjct: 532 ALQNGTQQVASIMHTSRDLTDSGVELARRAGASLGSITRTVSNIQAMNQQIAAAAEEQSA 591

Query: 578 SAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQ 616
            A  I RS+ + R   +Q A A+EE++ ++ E A    Q
Sbjct: 592 VAEEISRSVVNVRDVSEQTAAASEETAASSTELARLGGQ 630