Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  124 bits (311), Expect = 1e-32
 Identities = 90/327 (27%), Positives = 159/327 (48%), Gaps = 41/327 (12%)

Query: 48  AERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQ 107
           A R+ S  AE+    +   +A ++L +S        +  S+  +Q  TA++QM   ++E 
Sbjct: 260 ASRLTSIIAEVRTAADGVGTASSELLTSSASSNQQIQRQSAEAEQVATAINQMAATVSEV 319

Query: 108 ATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAV 167
           A++A  +       ++ +      + E   ++   ++    +   + ++S Q+  I   +
Sbjct: 320 ASFAANAATAAKSADEQVETGTRIVGETAVSIHNLAKVLESATDTVNQVSAQSGDIEKIL 379

Query: 168 KQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDIS 227
           + +  IA+QTNLLALNAAIEA RAG HG+GFAVVAD VR+LA + +++++ I  +I  + 
Sbjct: 380 QVITAIAEQTNLLALNAAIEAARAGDHGRGFAVVADEVRSLANRTQQSSSEISEMIASLQ 439

Query: 228 NGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAV 287
            GA      ++SS Q A+  V++       L  IR E           + A +EM++   
Sbjct: 440 AGAGRAVEVMQSSKQLAQQTVEQTLQAENALAKIRQE-----------VGAINEMNA--- 485

Query: 288 IALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKS 347
                   ++ A++EQSA  EE                   QS+  + D   TS+    +
Sbjct: 486 -------QIATASEEQSAVAEE-----------------VNQSVTRIHDSTVTSS---AA 518

Query: 348 SEEVAAAAEELSAGIEEINRSSNEIMG 374
           S +VAA++++L+   +E+NR  N   G
Sbjct: 519 SNQVAASSQDLTTLAQELNRRVNYFRG 545



 Score = 92.0 bits (227), Expect = 6e-23
 Identities = 93/407 (22%), Positives = 181/407 (44%), Gaps = 70/407 (17%)

Query: 254 VNKQLTLIRNE------MVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAAC 307
           +N+ +T++R        ++  V    VLL  A      AV+ ++   S   A  ++ A  
Sbjct: 177 INQDVTVVRETASGFLALIVAVTGVAVLLGVA-----IAVVIIRKLRSTLGAEPDEVARV 231

Query: 308 EESLKSLDQQQ--------IALDGAVTAAQSLDELTDELRTSTDIV-KSSEEVAAAAEEL 358
             +L + D  Q          +      A  L  +  E+RT+ D V  +S E+  ++   
Sbjct: 232 IGNLANGDLGQRIVTPYPDSVMGATAKMASRLTSIIAEVRTAADGVGTASSELLTSSASS 291

Query: 359 SAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLT----QIEQGARLGKERAESS 414
           +  I+  +  + ++  A+NQ+++    +A       T+      Q+E G R+  E A S 
Sbjct: 292 NQQIQRQSAEAEQVATAINQMAATVSEVASFAANAATAAKSADEQVETGTRIVGETAVS- 350

Query: 415 LKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVS 474
                                I  + +  ++AT+ +N+   +   S  I+KI+  I+ ++
Sbjct: 351 ---------------------IHNLAKVLESATDTVNQ---VSAQSGDIEKILQVITAIA 386

Query: 475 IQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVR 534
            QT +LA+N A+EAARAG++G+GFAVV+ ++++LAN   +++ +I + + ++Q       
Sbjct: 387 EQTNLLALNAAIEAARAGDHGRGFAVVADEVRSLANRTQQSSSEISEMIASLQAGAG--- 443

Query: 535 KDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQ 594
               +++ +  + AQ+      Q +N  +          +I +  G I    A       
Sbjct: 444 -RAVEVMQSSKQLAQQTVEQTLQAENALA----------KIRQEVGAINEMNA------- 485

Query: 595 QIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQSI 641
           QIATA+EE S    E   +  +   ST   ++A   +AA + +L ++
Sbjct: 486 QIATASEEQSAVAEEVNQSVTRIHDSTVTSSAASNQVAASSQDLTTL 532



 Score = 33.1 bits (74), Expect = 3e-05
 Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 12/130 (9%)

Query: 8   TTSASSSFSPSNHSTSANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGLEESSS 67
           T  +SS  S    S  A A +  A ++ + ++ LA  QQ  E+   A    LA + +   
Sbjct: 424 TQQSSSEISEMIASLQAGAGR--AVEVMQSSKQLA--QQTVEQTLQAE-NALAKIRQEVG 478

Query: 68  AMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVD 127
           A+ ++ +   QIA  +EE S+  ++   +V++++   +   T +  S Q+     QD+  
Sbjct: 479 AINEMNA---QIATASEEQSAVAEEVNQSVTRIH---DSTVTSSAASNQVAAS-SQDLTT 531

Query: 128 VANKINEMVS 137
           +A ++N  V+
Sbjct: 532 LAQELNRRVN 541