Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  105 bits (262), Expect = 5e-27
 Identities = 75/290 (25%), Positives = 142/290 (48%), Gaps = 32/290 (11%)

Query: 64  ESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQ----MNNFINEQATYATQSKQILT 119
           ++++ + Q+   + ++  G+EE++ + +    ++++    M   I E A  + Q+     
Sbjct: 267 DAATPLGQVSKELYKLTQGSEENAKSQQHHTDSITRDILTMTGSIQEVAQRSQQASDEAN 326

Query: 120 KLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNL 179
              +        +  + + +    +    +VK M +L E+  ++   +  +  IA+QTNL
Sbjct: 327 SAARQAATAREHVGSLSTGISDLGDSVMGAVKAMEQLEEETQEVGSVLTVIRSIAEQTNL 386

Query: 180 LALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKS 239
           LALNAAIEA RAG+ G+GFAVVAD VR LA+K   + A I+ +I+ + N A  V N + S
Sbjct: 387 LALNAAIEAARAGEQGRGFAVVADEVRNLAQKTAASTAEIQQIIQRLQNSANTVLNVMTS 446

Query: 240 SSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQA 299
           + +K+ + +Q+             E   L++     +   DE+++           ++Q 
Sbjct: 447 NGEKSRASIQRS-----------IEATQLLETIARTVNQIDELNA----------GIAQF 485

Query: 300 AQEQ---SAACEESLKSLDQQ-QIALDGAVTAAQSLDELT---DELRTST 342
            QEQ   S++ ++  + L Q  Q   +GA   A+  ++L    D LR +T
Sbjct: 486 TQEQIGLSSSIQQETQVLQQDAQATANGAEATARLGEQLVSTGDHLRAAT 535



 Score = 89.4 bits (220), Expect = 4e-22
 Identities = 72/317 (22%), Positives = 152/317 (47%), Gaps = 40/317 (12%)

Query: 319 IALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGA--- 375
           + + G + + QS+     +L    + V+S++E+ A  E  ++ ++++  +  +I+ A   
Sbjct: 213 VNIRGVIASLQSIARGDGDLTQRVN-VESNDEIGAMIELFNSFLDKLQSTIRQIIDAATP 271

Query: 376 -------LNQISSGAQHMAKSVETGITSLTQ--------IEQGARLGKERAESSLKACEK 420
                  L +++ G++  AKS +    S+T+        I++ A+  ++ ++ +  A  +
Sbjct: 272 LGQVSKELYKLTQGSEENAKSQQHHTDSITRDILTMTGSIQEVAQRSQQASDEANSAARQ 331

Query: 421 MLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAML 480
             T  E     V  +   I++   +    +  M  +E  ++++  ++  I +++ QT +L
Sbjct: 332 AATAREH----VGSLSTGISDLGDSVMGAVKAMEQLEEETQEVGSVLTVIRSIAEQTNLL 387

Query: 481 AVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIV------- 533
           A+N A+EAARAGE G+GFAVV+ +++NLA   A +  +I+  ++ +Q   N V       
Sbjct: 388 ALNAAIEAARAGEQGRGFAVVADEVRNLAQKTAASTAEIQQIIQRLQNSANTVLNVMTSN 447

Query: 534 -RKDLADILSTV--MEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADAR 590
             K  A I  ++   +  +  A T+ Q+D + +       G  + ++   G+  SI    
Sbjct: 448 GEKSRASIQRSIEATQLLETIARTVNQIDELNA-------GIAQFTQEQIGLSSSIQQET 500

Query: 591 AGMQQIATAAEESSHAT 607
             +QQ A A    + AT
Sbjct: 501 QVLQQDAQATANGAEAT 517