Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 682 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2
Score = 103 bits (258), Expect = 2e-26
Identities = 78/258 (30%), Positives = 134/258 (51%), Gaps = 33/258 (12%)
Query: 57 ELLAGLEES----SSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYAT 112
EL+A + ++ S A + +++ +A +E + + A+++M I++ + A
Sbjct: 395 ELVATINQTAVQVSGAAQETQATAMHLAEASEHQAQEIAGASAAINEMAVSIDQVSANAA 454
Query: 113 QSKQILTKLEQDIVDVANKINEMVSNVQTSS----ERQNDSVKRMIELSEQAAKINDAVK 168
+S + + V +ANK NE+V N T E+ D+ KR+ L E + +I D V
Sbjct: 455 ESSAVAERS----VAIANKGNEVVHNTITGMDNIREQIQDTSKRIKRLGESSQEIGDIVS 510
Query: 169 QVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISN 228
+ IADQTN+LALNAAI+A AG G+GFAVVAD V+ LAE++ IE+L+K I
Sbjct: 511 LINDIADQTNILALNAAIQASMAGDAGRGFAVVADEVQRLAERSSAATKQIEALVKTIQT 570
Query: 229 GAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVI 288
+N S ++ SEV +G L +D+ V L+ +++S
Sbjct: 571 D----TNEAVISMEQTTSEVVRG--------------ARLAQDAGVALEEIEKVSKTLAA 612
Query: 289 ALKGSESVSQAAQEQSAA 306
+ +++S AA++Q+++
Sbjct: 613 LI---QNISNAARQQASS 627
Score = 100 bits (250), Expect = 2e-25
Identities = 134/647 (20%), Positives = 262/647 (40%), Gaps = 95/647 (14%)
Query: 48 AERVASATAELLAGLEESSSAMTQLRSSMEQI---------AVGAEESSSATKQSETAVS 98
++++A E G +E+ +++ Q R+ Q ++G + + AV
Sbjct: 61 SQQIAKDAVEAATGTQEAFASLKQARNDFNQRWGYLAQGNESIGLPAVPESLRTEVNAVE 120
Query: 99 QMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSE 158
Q N + S+Q + L Q VA+ + E + +Q E + V ++E
Sbjct: 121 QDWNTLRRDTDAILSSEQTVLSLHQ----VASTLAETIPQLQVEYE---EVVDILLESGA 173
Query: 159 QAAKINDAVKQVIHI------------ADQTNLLA--------------LNAAIEAGRAG 192
AA+++ A +Q + DQ ++ A LNA IE G
Sbjct: 174 PAAQVSVAQRQSLLAERILGSVNKVLSGDQDSVQAADMFGRDASLFGRVLNAMIE----G 229
Query: 193 KHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGH 252
G VAD ++A + I L + +S + + Q ES
Sbjct: 230 NVAMGITAVAD------DEARDRLSEIAELFQFVSGSVDEILETSPELFQVRESANSIFE 283
Query: 253 VVNKQL--TLIRNEMVDLVKDSEVLLKAADEMSSAAVIA---LKGSESVSQAAQEQSAAC 307
V L T ++ + D+ L + A +A L G V +A + S
Sbjct: 284 VSQTLLDKTSALSQGLQNRADARYLNTILGYVLGALALASIILIGLVMVQEARRRLSETA 343
Query: 308 EES-------LKSLDQQQIALDGAVTAAQSLDE-----LTDELRTSTDIVKSSEEVAAAA 355
E++ L+ LD+ DG +T A ++ E + D + S D ++ E+ A
Sbjct: 344 EKNERNQAAILRLLDEIGDLADGDLTVAATVTEDFTGAIADSINYSIDQLR---ELVATI 400
Query: 356 EELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSL 415
+ + +++ ++ E ++ ++H A+ + ++ ++ A S
Sbjct: 401 NQTAV---QVSGAAQETQATAMHLAEASEHQAQEIAGASAAINEMAVSIDQVSANAAESS 457
Query: 416 KACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSI 475
E+ + + V I + + + + + S++I IV I++++
Sbjct: 458 AVAERSVAIANKGNEVVHNTITGMDNIREQIQDTSKRIKRLGESSQEIGDIVSLINDIAD 517
Query: 476 QTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRK 535
QT +LA+N A++A+ AG+ G+GFAVV+ ++Q LA ++ +QI+ VK IQ N
Sbjct: 518 QTNILALNAAIQASMAGDAGRGFAVVADEVQRLAERSSAATKQIEALVKTIQTDTNEAVI 577
Query: 536 DLADILSTVMEE---AQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAG 592
+ S V+ AQ A + +++++ V ++ ++ + IS +A
Sbjct: 578 SMEQTTSEVVRGARLAQDAGVALEEIEKVSKTLAALI---QNISNAA------------- 621
Query: 593 MQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQ 639
+Q A++A S+ Q SS T+ A +I N+A +A+E++
Sbjct: 622 -RQQASSAGHISNTMNVIQEITSQTSSGTTATAKSIGNLAKMANEMR 667
Score = 48.1 bits (113), Expect = 1e-09
Identities = 74/429 (17%), Positives = 171/429 (39%), Gaps = 40/429 (9%)
Query: 46 QAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFIN 105
+ ++ + T+ L GL+ + A + +++ +GA +S V + ++
Sbjct: 283 EVSQTLLDKTSALSQGLQNRADA--RYLNTILGYVLGALALASIILIGLVMVQEARRRLS 340
Query: 106 EQATYATQSKQILTKLEQDIVDVANKINEMVSNV-QTSSERQNDSVKRMIE-LSEQAAKI 163
E A +++ + +L +I D+A+ + + V + + DS+ I+ L E A I
Sbjct: 341 ETAEKNERNQAAILRLLDEIGDLADGDLTVAATVTEDFTGAIADSINYSIDQLRELVATI 400
Query: 164 NDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLI 223
N QV A +T A++ A +E + A + I
Sbjct: 401 NQTAVQVSGAAQETQATAMHLA---------------------EASEHQAQEIAGASAAI 439
Query: 224 KDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMS 283
+++ + VS SS AE V + NK ++ N + + D +
Sbjct: 440 NEMAVSIDQVSANAAESSAVAERSVA---IANKGNEVVHNTITGM-----------DNIR 485
Query: 284 SAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQI-ALDGAVTAAQSLDELTDELRTST 342
K + + +++QE DQ I AL+ A+ A+ + D +
Sbjct: 486 EQIQDTSKRIKRLGESSQEIGDIVSLINDIADQTNILALNAAIQASMAGDAGRGFAVVAD 545
Query: 343 DIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQ 402
++ + +E +AA +++ A ++ I +NE + ++ Q +S A+ + +L +IE+
Sbjct: 546 EVQRLAERSSAATKQIEALVKTIQTDTNEAVISMEQTTSEVVRGARLAQDAGVALEEIEK 605
Query: 403 GARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQ 462
++ ++ A + + T++ + ++++ T + N+ +++ +
Sbjct: 606 VSKTLAALIQNISNAARQQASSAGHISNTMNVIQEITSQTSSGTTATAKSIGNLAKMANE 665
Query: 463 IDKIVDGIS 471
+ V G +
Sbjct: 666 MRHSVSGFT 674
Score = 46.2 bits (108), Expect = 5e-09
Identities = 109/575 (18%), Positives = 222/575 (38%), Gaps = 84/575 (14%)
Query: 71 QLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQI--LTKLEQDIVDV 128
+LR +QIA A E+++ T+++ ++ Q N N++ Y Q + L + + +
Sbjct: 56 ELRVLSQQIAKDAVEAATGTQEAFASLKQARNDFNQRWGYLAQGNESIGLPAVPESLRTE 115
Query: 129 ANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQV-IHIADQTNLLALNAAIE 187
N + + + ++ ++ S + ++ L + A+ + + + Q+ + + ++L +E
Sbjct: 116 VNAVEQDWNTLRRDTDAILSSEQTVLSLHQVASTLAETIPQLQVEYEEVVDIL-----LE 170
Query: 188 AGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKD-ISNGAEMVSNGVKSSSQKAES 246
+G A A+ + A +SL+ + I V +G + S Q A+
Sbjct: 171 SG-------------------APAAQVSVAQRQSLLAERILGSVNKVLSGDQDSVQAADM 211
Query: 247 EVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAA 306
+ + + L N M++ + A DE A +++ Q S +
Sbjct: 212 FGRDASLFGRVL----NAMIEGNVAMGITAVADDE-------ARDRLSEIAELFQFVSGS 260
Query: 307 CEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEIN 366
+E L ++ EL ++ I + S+ + LS G++ N
Sbjct: 261 VDEIL-----------------ETSPELFQVRESANSIFEVSQTLLDKTSALSQGLQ--N 301
Query: 367 RSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIE 426
R+ + + GA +A + G L +++ R E AE + + +L ++
Sbjct: 302 RADARYLNTILGYVLGALALASIILIG---LVMVQEARRRLSETAEKNERNQAAILRLLD 358
Query: 427 ENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAV 486
E D + T+ T + + N Q+ ++V I+ ++Q + A
Sbjct: 359 EIGDLADGDLTVAATVTEDFTGAIADSINYS--IDQLRELVATINQTAVQVSGAAQETQA 416
Query: 487 EAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVME 546
A E + A N+ A + +Q+ N E + + +A I + E
Sbjct: 417 TAMHLAEASEHQAQEIAGASAAINEMAVSIDQVS---ANAAESSAVAERSVA-IANKGNE 472
Query: 547 EAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHA 606
TI +DN+R ++ D KR+ ES+ + I D I + + +
Sbjct: 473 VVHN---TITGMDNIREQIQDTSKRIKRLGESS----QEIGD-------IVSLINDIADQ 518
Query: 607 TGEAATAARQQSSSTSELASAIENIAAVADELQSI 641
T A A Q+S + A A VADE+Q +
Sbjct: 519 TNILALNAAIQASMAGD---AGRGFAVVADEVQRL 550