Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  110 bits (276), Expect = 1e-28
 Identities = 75/286 (26%), Positives = 145/286 (50%), Gaps = 16/286 (5%)

Query: 42  ARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSAT-------KQSE 94
           AR   A + +  +  E + G+ +SS+   QL S+ E++ V  E+S+          +Q+ 
Sbjct: 244 ARLLSALQAMQRSLRETIQGISDSSN---QLASAAEELNVVTEDSTRGLHQQNHEIEQAA 300

Query: 95  TAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMI 154
           TAV++M   ++E A  A  + +   + ++       ++   V ++   ++    +   + 
Sbjct: 301 TAVNEMTAAVDEVARNAVATSEASRESDETAQHGRQQVIRTVDSIGLLADDVTQTATEVE 360

Query: 155 ELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEK 214
            L+ Q   I+  +  +  IA+QTNLLALNAAIEA RAG  G+GFAVVAD VR LA + ++
Sbjct: 361 RLAGQVRDISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQQ 420

Query: 215 NAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEV 274
           +   IE +I D+  G +   + ++ S+++A + ++      + L  I + +  + + + V
Sbjct: 421 STQEIEQMIGDVHQGTDKAVHAMQLSNERARTTLELARAAGEALDGIASAISQISERNLV 480

Query: 275 LLKAADEMSSAA------VIALKGSESVSQAAQEQSAACEESLKSL 314
           +  A++E +  A      ++ ++     S A   Q++A  + L  L
Sbjct: 481 IASASEEQAQVAREVDRNLVNIRDLSLQSSAGANQTSAASQELARL 526



 Score = 95.5 bits (236), Expect = 5e-24
 Identities = 84/336 (25%), Positives = 160/336 (47%), Gaps = 49/336 (14%)

Query: 317 QQIALDGAVTAAQSLDELTDELR-TSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGA 375
           Q +  D       +L  +   LR T   I  SS ++A+AAEEL+   E+  R  ++    
Sbjct: 236 QVVGSDEPARLLSALQAMQRSLRETIQGISDSSNQLASAAEELNVVTEDSTRGLHQQNHE 295

Query: 376 LNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEM 435
           + Q ++    M  +V+          + AR     +E+S ++ E    G ++   TVD +
Sbjct: 296 IEQAATAVNEMTAAVD----------EVARNAVATSEASRESDETAQHGRQQVIRTVDSI 345

Query: 436 ILAITESTKAATENLNEMANIERIS---RQIDKIVDGISNVSIQTAMLAVNGAVEAARAG 492
            L   + T+ ATE       +ER++   R I K++D I +++ QT +LA+N A+EAARAG
Sbjct: 346 GLLADDVTQTATE-------VERLAGQVRDISKVLDVIRSIAEQTNLLALNAAIEAARAG 398

Query: 493 EYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAA 552
           + G+GFAVV+ +++ LA+   ++ ++I+  + ++                    +    A
Sbjct: 399 DAGRGFAVVADEVRALAHRTQQSTQEIEQMIGDV-------------------HQGTDKA 439

Query: 553 LTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEA-- 610
           +   QL N R+R +  +  ++   E+  GI  +I+        IA+A+EE +    E   
Sbjct: 440 VHAMQLSNERARTTLEL--ARAAGEALDGIASAISQISERNLVIASASEEQAQVAREVDR 497

Query: 611 -----ATAARQQSSSTSELASAIENIAAVADELQSI 641
                   + Q S+  ++ ++A + +A +A +L ++
Sbjct: 498 NLVNIRDLSLQSSAGANQTSAASQELARLAIDLNNL 533