Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Xanthomonas campestris pv. campestris strain 8004

 Score =  108 bits (269), Expect = 8e-28
 Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 33/298 (11%)

Query: 41  LARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQM 100
           + R QQAA+ +  + +E+ AG  + S    Q  +++E+ A   EE +S  KQ+  +  Q 
Sbjct: 273 VGRIQQAAQSITGSASEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAESARQA 332

Query: 101 NNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQA 160
           N      A  A+Q   ++++    +VD        +S +QTSS+                
Sbjct: 333 NQLAIGAAGVASQGGHVVSQ----VVDT-------MSGIQTSSK---------------- 365

Query: 161 AKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIE 220
            KI + +  +  IA QTN+LALNAA+EA RAG+ G+GFAVVA  VRTLA+++   A  I+
Sbjct: 366 -KIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIK 424

Query: 221 SLIKD----ISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLL 276
            LI D    ++ GA +V    K+ +    S VQ+   +  +++    E    ++   + +
Sbjct: 425 HLIDDSVGKVTQGAALVDQAGKTMAD-IVSSVQRVTDIMGEISAASQEQSAGIEQVNLTI 483

Query: 277 KAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDEL 334
              DE +      ++ + + + A Q+Q+   ++++ S             AAQ  D L
Sbjct: 484 TQMDESTQQNAALVEEATAAANAMQQQAQQLDDAVSSFRVTATVPSLRARAAQHTDAL 541



 Score = 93.6 bits (231), Expect = 2e-23
 Identities = 75/298 (25%), Positives = 146/298 (48%), Gaps = 43/298 (14%)

Query: 349 EEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQ----IEQGA 404
           ++    A +LS  +  I +++  I G+ ++I++G   +++  E    +L +    +E+  
Sbjct: 260 DDANTTALQLSGIVGRIQQAAQSITGSASEIAAGNNDLSQRTEQQAANLEETAASMEELT 319

Query: 405 RLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQID 464
              K+ AES+ +A          N+  +    +A ++     ++ ++ M+ I+  S++I 
Sbjct: 320 STVKQNAESARQA----------NQLAIGAAGVA-SQGGHVVSQVVDTMSGIQTSSKKIA 368

Query: 465 KIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVK 524
           +I+  I  ++ QT +LA+N AVEAARAGE G+GFAVV+++++ LA  +A  A++IK  + 
Sbjct: 369 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLID 428

Query: 525 NIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIER 584
           +                 +V +  Q AAL    +D     M+D+V   +R+++  G I  
Sbjct: 429 D-----------------SVGKVTQGAAL----VDQAGKTMADIVSSVQRVTDIMGEISA 467

Query: 585 SIADARAGMQQI---ATAAEESSHATG----EAATAARQQSSSTSELASAIENIAAVA 635
           +  +  AG++Q+    T  +ES+        EA  AA        +L  A+ +    A
Sbjct: 468 ASQEQSAGIEQVNLTITQMDESTQQNAALVEEATAAANAMQQQAQQLDDAVSSFRVTA 525



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 62/329 (18%), Positives = 121/329 (36%), Gaps = 39/329 (11%)

Query: 326 TAAQSLDELTDELRTSTDIVKSSEEVAAAAEELS---AGIEEINRSSNEIMGALNQISSG 382
           TA    DE+   L+ + D+V + E  +A  + +    AG +  +R   +  G   +++ G
Sbjct: 67  TAEHGNDEIGQMLKATDDMVHTLERFSAQTKVMMHKHAGEDISHRMPTDFPGVYGELAGG 126

Query: 383 AQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTG----IEENKTTVDEMILA 438
              M          L  I     +  E A+  L      L G    + E        +LA
Sbjct: 127 INTMI------FEHLDAIVAAVGILNEYAQGDLSRDATRLPGTRAVLHEAMDAAKASLLA 180

Query: 439 ITESTK-----AATENLNEMANIERISRQIDKIVDGIS--------NVSIQTAMLAV--N 483
           I    K     AA  + ++  +  R      ++++ ++        N+   + +LA    
Sbjct: 181 INTEIKRLAQAAANGDFSQRGDATRFKHDSARMINDLNAMMDVSDRNLGKLSELLAALAE 240

Query: 484 GAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILST 543
           G + A   G++   FA        + +DA   A Q+   V  IQ+    +    ++I + 
Sbjct: 241 GDLTARMEGDFHGVFA-------RMRDDANTTALQLSGIVGRIQQAAQSITGSASEIAAG 293

Query: 544 VMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEES 603
             + +Q+       L+   + M ++    K+ +ESA    R       G   +A+     
Sbjct: 294 NNDLSQRTEQQAANLEETAASMEELTSTVKQNAESA----RQANQLAIGAAGVASQGGHV 349

Query: 604 SHATGEAATAARQQSSSTSELASAIENIA 632
                +  +  +  S   +E+ S I+ IA
Sbjct: 350 VSQVVDTMSGIQTSSKKIAEIISVIDGIA 378