Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  124 bits (312), Expect = 1e-32
 Identities = 82/276 (29%), Positives = 142/276 (51%), Gaps = 10/276 (3%)

Query: 45  QQAAERVASATAELLAGLEES----SSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQM 100
           QQ  +R+ +   EL++G+ +     +SA  +L +  EQ + G       T Q  TA+ +M
Sbjct: 348 QQGIQRMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEM 407

Query: 101 NNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSE---RQNDSVKRMIELS 157
           +  ++E A  A Q+    +  +Q   D    + E +  ++  +    R +D++  + + S
Sbjct: 408 SATVHEVARNAEQASVAASDADQQARDGDKVVGEAIQQIERLAAEVVRSSDAMNVLEQDS 467

Query: 158 EQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAA 217
           ++  K+ D +K V   A+QTNLLALNAAIEA RAG+ G+GFAVVAD VR LA++ +++  
Sbjct: 468 DKIGKVMDVIKAV---AEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTE 524

Query: 218 NIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLK 277
            IE L+  + NG   VS  +  S    +S V+        L  I   +  +   ++ +  
Sbjct: 525 EIEGLVAALQNGTRQVSGIMLGSRTLTDSSVELTRRAGTSLESITRTVSSIQAMNQQIAA 584

Query: 278 AADEMSSAAVIALKGSESVSQAAQEQSAACEESLKS 313
           AA++ SS A    +   +V   +++ + A EE+  S
Sbjct: 585 AAEQQSSVADEISRSIVNVRDVSEQTAEASEETAAS 620



 Score =  107 bits (267), Expect = 2e-27
 Identities = 79/316 (25%), Positives = 155/316 (49%), Gaps = 29/316 (9%)

Query: 309 ESLKSLDQQQIALDGAVTAAQSLDELTDELRTS-TDIVKSSEEVAAAAEELSAGIEEINR 367
           E++   D+  +   G      +L EL   +R   T I  ++EE++A  E+ SAG+     
Sbjct: 336 EAVTRRDELGVLQQGIQRMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKV 395

Query: 368 SSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEE 427
            ++++  A++++S+    +A++ E    + +  +Q AR G +                  
Sbjct: 396 ETDQVATAMHEMSATVHEVARNAEQASVAASDADQQARDGDK------------------ 437

Query: 428 NKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVE 487
               V E I  I         + + M  +E+ S +I K++D I  V+ QT +LA+N A+E
Sbjct: 438 ---VVGEAIQQIERLAAEVVRSSDAMNVLEQDSDKIGKVMDVIKAVAEQTNLLALNAAIE 494

Query: 488 AARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQ---EQINIVRKDLADILSTV 544
           AARAGE G+GFAVV+ +++ LA    ++ E+I+  V  +Q    Q++ +      +  + 
Sbjct: 495 AARAGEAGRGFAVVADEVRGLAQRTQQSTEEIEGLVAALQNGTRQVSGIMLGSRTLTDSS 554

Query: 545 MEEAQKAALTIKQL----DNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAA 600
           +E  ++A  +++ +     ++++    +   +++ S  A  I RSI + R   +Q A A+
Sbjct: 555 VELTRRAGTSLESITRTVSSIQAMNQQIAAAAEQQSSVADEISRSIVNVRDVSEQTAEAS 614

Query: 601 EESSHATGEAATAARQ 616
           EE++ ++ E A    Q
Sbjct: 615 EETAASSVELARLGGQ 630



 Score = 38.9 bits (89), Expect = 7e-07
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 533 VRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAG 592
           + + L D L+ ++E      LT  +    R  +  +  G +R+  +   +   I+  R G
Sbjct: 313 ITRPLRDTLA-IVERIASGDLTHTEAVTRRDELGVLQQGIQRMGTT---LRELISGIRDG 368

Query: 593 MQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
           + QIA+AAEE S  T + +     Q   T ++A+A+  ++A   E+
Sbjct: 369 VTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATVHEV 414