Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 541 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a
Score = 130 bits (328), Expect = 1e-34
Identities = 88/322 (27%), Positives = 163/322 (50%), Gaps = 2/322 (0%)
Query: 3 LKKHITTSASSSFSPSNHSTSANAPKKEADDLRRQA-RTLARKQQAAERVASATAELLAG 61
L K ITT +++ + N + + D +A R L + +++ +
Sbjct: 210 LIKSITTPIATALLAAETIAQGNLTRPISIDGTDEAGRLLLAMKTMQDKLRDTLQGISGS 269
Query: 62 LEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKL 121
+ +SA +L + ++ A G + + +Q+ TAV+QM + + E A AT + Q
Sbjct: 270 ATQLASAAEELNAVTDESARGLVQQNDEIEQAATAVNQMTSAVEEVARNATSTSQASRSA 329
Query: 122 EQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLA 181
D + + E VS ++ S + + +I L+ ++ I + + +ADQTNLLA
Sbjct: 330 ATSAGDGRDLVQETVSAIERMSGDVQGTAELIISLANESRDIGKVLDVIRGLADQTNLLA 389
Query: 182 LNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSS 241
LNAAIEA RAG+ G+GFAVVAD VR LA + +++ + IE +I I G E + +++S+
Sbjct: 390 LNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMISSIQTGTEQAVSSMRNST 449
Query: 242 QKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQ-AA 300
++AES + + L I + + ++ + + V+ AA+E + A + ++ +A
Sbjct: 450 ERAESTLNIAKGAGQALNTINSAVEEINERNMVIASAAEEQAQVAREVDRNLVNIRDLSA 509
Query: 301 QEQSAACEESLKSLDQQQIALD 322
Q + A + S S + ++A+D
Sbjct: 510 QSTNGANQTSAASTELSRLAID 531
Score = 97.4 bits (241), Expect = 1e-24
Identities = 118/555 (21%), Positives = 246/555 (44%), Gaps = 91/555 (16%)
Query: 96 AVSQMNNFINEQATYATQSKQILTKLEQDI-VDVANKINEMVSNVQTSSERQNDSVKRMI 154
A+SQM+ + A + + L++ V + ++ V E Q +++ M
Sbjct: 30 ALSQMSKIRSATEVLADSNVPSIKSLDRFAEVSIRLRVLSYRLLVNRDPETQQKTIELMA 89
Query: 155 ELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEK 214
++Q +++I D+ NL + + G++ + + D ++TL
Sbjct: 90 MRNKQITDAQAVYEKLISTPDERNLYSQYVQL----LGQYRQ----LEDRLKTLTR---- 137
Query: 215 NAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDL--VKDS 272
A NI+ L ++N EMVSN + Q+ ++ ++VD+ + +
Sbjct: 138 -ANNIDELQGLLNN--EMVSN-------------------SDQMNVVLRKLVDINTAQLN 175
Query: 273 EVLLKAADEMSSA---------------AVIALKGSESVSQAAQEQSAACEESLKSLDQQ 317
EV +A+ E SA V A +S++ A E + +
Sbjct: 176 EVKEQASIEYDSAFNMVIGLLIAATLLTLVFAWMLIKSITTPIATALLAAETIAQGNLTR 235
Query: 318 QIALDGAVTAAQSL-------DELTDELR----TSTDIVKSSEEVAAAAEELSAGIEEIN 366
I++DG A + L D+L D L+ ++T + ++EE+ A +E + G+ + N
Sbjct: 236 PISIDGTDEAGRLLLAMKTMQDKLRDTLQGISGSATQLASAAEELNAVTDESARGLVQQN 295
Query: 367 RSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIE 426
+ A+NQ++S + +A++ + + A G++ + ++ A E+M ++
Sbjct: 296 DEIEQAATAVNQMTSAVEEVARNATSTSQASRSAATSAGDGRDLVQETVSAIERMSGDVQ 355
Query: 427 ENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAV 486
E+I+++ SR I K++D I ++ QT +LA+N A+
Sbjct: 356 GTA----ELIISLANE-----------------SRDIGKVLDVIRGLADQTNLLALNAAI 394
Query: 487 EAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQ----EQINIVRK--DLADI 540
EAARAGE G+GFAVV+ +++ LA+ ++ +I+ + +IQ + ++ +R + A+
Sbjct: 395 EAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMISSIQTGTEQAVSSMRNSTERAES 454
Query: 541 LSTVMEEAQKAALTIKQ-LDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATA 599
+ + A +A TI ++ + R + ++ ++ A ++R++ + R Q
Sbjct: 455 TLNIAKGAGQALNTINSAVEEINERNMVIASAAEEQAQVAREVDRNLVNIRDLSAQSTNG 514
Query: 600 AEESSHATGEAATAA 614
A ++S A+ E + A
Sbjct: 515 ANQTSAASTELSRLA 529
Score = 33.5 bits (75), Expect = 3e-05
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 541 LSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQ----QI 596
++T + A AA TI Q + R D + R+ + ++ + D G+ Q+
Sbjct: 214 ITTPIATALLAAETIAQGNLTRPISIDGTDEAGRLLLAMKTMQDKLRDTLQGISGSATQL 273
Query: 597 ATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
A+AAEE + T E+A QQ+ + A+A+ + + +E+
Sbjct: 274 ASAAEELNAVTDESARGLVQQNDEIEQAATAVNQMTSAVEEV 315