Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  105 bits (261), Expect = 7e-27
 Identities = 95/332 (28%), Positives = 150/332 (45%), Gaps = 48/332 (14%)

Query: 36  RQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSET 95
           R    L R Q  AE + S   +  +    SS  + + R   EQ+A    + ++ T++  +
Sbjct: 238 RMKTCLTRLQDTAEHLNSQARQSNSLANASSIGLERQRVETEQVAAAINQMAATTQEVAS 297

Query: 96  AVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIE 155
            V++        A  ATQ    LT+  +DI   A +  E +  + TS      +V R+ +
Sbjct: 298 HVNR--------AADATQQANELTRRGRDI---AGETREAIQRLSTSVGETGLTVTRLAK 346

Query: 156 LSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKN 215
            S++   + D +K    IADQTNLLALNAAIEA RAG+ G+GFAVVAD VR LA++  ++
Sbjct: 347 DSDEIGGVVDVIKG---IADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAES 403

Query: 216 AANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVL 275
              I  LI  +   A    + + +  ++AE  V +    ++ L  I          SE +
Sbjct: 404 TGQIHGLIAKLQQTATDAVHTMDTGRRQAEEGVARVLEADQALVGI----------SEAV 453

Query: 276 LKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELT 335
               D            +  ++ A +EQSA  EE  +++           T A   D+ +
Sbjct: 454 ANITDM-----------TTQIATATEEQSAVAEEINRNI----------ATIASLADQTS 492

Query: 336 DELRTSTDIVKSSEEVAAAAEELSAGIEEINR 367
           DE R S  +   S E+   A    + +E  NR
Sbjct: 493 DEARRSAVL---SGELTDTANSQYSLVERFNR 521



 Score = 99.4 bits (246), Expect = 4e-25
 Identities = 85/353 (24%), Positives = 157/353 (44%), Gaps = 47/353 (13%)

Query: 275 LLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDE- 333
           LL+ A++ +S  +IA   ++S    A+ +         S+  Q+  +   +T  Q   E 
Sbjct: 201 LLRLAEQTTSDPLIAQMYTDSRGPQARLEM--------SILSQEARMKTCLTRLQDTAEH 252

Query: 334 LTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETG 393
           L  + R S  +  +S          S G+E     + ++  A+NQ+++  Q +A  V   
Sbjct: 253 LNSQARQSNSLANAS----------SIGLERQRVETEQVAAAINQMAATTQEVASHVNRA 302

Query: 394 ITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEM 453
             +  Q  +  R G++ A  + +A +++ T + E   TV                     
Sbjct: 303 ADATQQANELTRRGRDIAGETREAIQRLSTSVGETGLTV--------------------- 341

Query: 454 ANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAA 513
             + + S +I  +VD I  ++ QT +LA+N A+EAARAGE G+GFAVV+ +++ LA   A
Sbjct: 342 TRLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTA 401

Query: 514 ENAEQIKDQVKNIQE-------QINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMS 566
           E+  QI   +  +Q+        ++  R+   + ++ V+E  Q      + + N+    +
Sbjct: 402 ESTGQIHGLIAKLQQTATDAVHTMDTGRRQAEEGVARVLEADQALVGISEAVANITDMTT 461

Query: 567 DVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSS 619
            +   ++  S  A  I R+IA   +   Q +  A  S+  +GE    A  Q S
Sbjct: 462 QIATATEEQSAVAEEINRNIATIASLADQTSDEARRSAVLSGELTDTANSQYS 514



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 37/219 (16%), Positives = 85/219 (38%), Gaps = 36/219 (16%)

Query: 7   ITTSASSSFSPSNHSTSANAPKKEADDLRRQARTLARK-QQAAERVASATAE-------L 58
           I   A+++   ++H   A    ++A++L R+ R +A + ++A +R++++  E       L
Sbjct: 285 INQMAATTQEVASHVNRAADATQQANELTRRGRDIAGETREAIQRLSTSVGETGLTVTRL 344

Query: 59  LAGLEESSSAMTQLRSSMEQI-------AVGAEESSSATKQSETAVSQMNNFINEQATYA 111
               +E    +  ++   +Q        A+ A  +    +       ++       A   
Sbjct: 345 AKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAEST 404

Query: 112 TQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVI 171
            Q   ++ KL+Q   D  + ++      +    R  ++ + ++ +SE  A I D   Q+ 
Sbjct: 405 GQIHGLIAKLQQTATDAVHTMDTGRRQAEEGVARVLEADQALVGISEAVANITDMTTQIA 464

Query: 172 ---------------------HIADQTNLLALNAAIEAG 189
                                 +ADQT+  A  +A+ +G
Sbjct: 465 TATEEQSAVAEEINRNIATIASLADQTSDEARRSAVLSG 503