Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  111 bits (277), Expect = 1e-28
 Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 20/281 (7%)

Query: 40  TLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQ 99
           T+ +   A++++ASA  EL A  +ES+  +T+    ++Q A              TAV+Q
Sbjct: 291 TIQQIASASDQLASAAEELSAVTDESTRGLTRQNDEIQQAA--------------TAVNQ 336

Query: 100 MNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQ 159
           M   + E A  A  + +       D VD   +++  V  + T       S   + EL+  
Sbjct: 337 MTAAVEEVARNAVSTSEASKSATDDAVDGRGQVDHTVKGITTMVHEITASTGAVSELAGH 396

Query: 160 AAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANI 219
             +I+  +  +  IA+QTNLLALNAAIEA RAG+ G+GFAVVAD VR LA + + +   I
Sbjct: 397 VREISKVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQASTVEI 456

Query: 220 ESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAA 279
           E +I  + +GA+     +  S   A +  +        L  I   +  + + + V+  A+
Sbjct: 457 EGMISTVQSGADGAVAAMGKSLSLATNTQELALRAGAALEKITLGVATINERNLVIASAS 516

Query: 280 DEMSSAA------VIALKGSESVSQAAQEQSAACEESLKSL 314
           +E +  A      +I ++   + S A   Q++A  + L  L
Sbjct: 517 EEQAQVAREVDRNLINIQDLSTQSAAGANQTSASSQELSRL 557



 Score = 95.5 bits (236), Expect = 6e-24
 Identities = 85/320 (26%), Positives = 146/320 (45%), Gaps = 39/320 (12%)

Query: 317 QQIALDGAVTAAQSLDELTDEL----RTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEI 372
           Q I       A Q L+ L+D       T   I  +S+++A+AAEELSA  +E  R     
Sbjct: 264 QPIVSTSGDEAGQLLNALSDMQGGLKNTIQQIASASDQLASAAEELSAVTDESTRGLTRQ 323

Query: 373 MGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTV 432
              + Q ++    M  +VE          + AR     +E+S  A +  + G    +  V
Sbjct: 324 NDEIQQAATAVNQMTAAVE----------EVARNAVSTSEASKSATDDAVDG----RGQV 369

Query: 433 DEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAG 492
           D  +  IT      T +   ++ +    R+I K++D I +++ QT +LA+N A+EAARAG
Sbjct: 370 DHTVKGITTMVHEITASTGAVSELAGHVREISKVLDVIRSIAEQTNLLALNAAIEAARAG 429

Query: 493 EYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAA 552
           E G+GFAVV+ +++ LA+    +  +I+  +  +Q          AD     M ++   A
Sbjct: 430 EQGRGFAVVADEVRALAHRTQASTVEIEGMISTVQSG--------ADGAVAAMGKSLSLA 481

Query: 553 LTIKQLD-NVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSH------ 605
              ++L     + +  + LG   I+      ER++  A A  +Q   A E   +      
Sbjct: 482 TNTQELALRAGAALEKITLGVATIN------ERNLVIASASEEQAQVAREVDRNLINIQD 535

Query: 606 ATGEAATAARQQSSSTSELA 625
            + ++A  A Q S+S+ EL+
Sbjct: 536 LSTQSAAGANQTSASSQELS 555



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 18/64 (28%), Positives = 35/64 (54%)

Query: 575 ISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAV 634
           +S+  GG++ +I    +   Q+A+AAEE S  T E+     +Q+    + A+A+  + A 
Sbjct: 281 LSDMQGGLKNTIQQIASASDQLASAAEELSAVTDESTRGLTRQNDEIQQAATAVNQMTAA 340

Query: 635 ADEL 638
            +E+
Sbjct: 341 VEEV 344