Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 642 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a
Score = 125 bits (315), Expect = 4e-33
Identities = 80/271 (29%), Positives = 144/271 (53%), Gaps = 20/271 (7%)
Query: 50 RVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQAT 109
++A+A EL A E++S+ +TQ + ++Q+A + +S ++ + + +
Sbjct: 373 QIATAAEELSAVSEQTSAGVTQQKLEVDQVATAMNQMASTVQEVAQNTEDASQAARQASD 432
Query: 110 YATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQ 169
A ++ ++I +A ++ ++ ++++R+I+ S++ + D +K
Sbjct: 433 RAAHGSSVVQHATREISQLAGEVGQL-----------GEAMQRLIQDSDKIGGVIDVIKA 481
Query: 170 VIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNG 229
V A+QTNLLALNAAIEA RAG+ G+GFAVVAD VR+LA++ + + IE+LIK + +G
Sbjct: 482 V---AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQSSTTEIEALIKSLQDG 538
Query: 230 AEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSA---- 285
S + +S Q+ E V + L I + +V + + S+ + AA+E S+
Sbjct: 539 TGAASELMNASRQRTEGTVALARQAEESLLEITHSIVTIEQMSQQISAAAEEQSAVTDEI 598
Query: 286 --AVIALKGSESVSQAAQEQSAACEESLKSL 314
+VI+++ S A EQSAA L L
Sbjct: 599 NRSVISVRDIADQSATATEQSAASTVELARL 629
Score = 99.4 bits (246), Expect = 4e-25
Identities = 85/304 (27%), Positives = 138/304 (45%), Gaps = 56/304 (18%)
Query: 342 TDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIE 401
T I ++EE++A +E+ SAG+ + +++ A+NQ++S Q +A++ E
Sbjct: 372 TQIATAAEELSAVSEQTSAGVTQQKLEVDQVATAMNQMASTVQEVAQNTEDA-------S 424
Query: 402 QGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISR 461
Q AR +RA + I + V ++ A M + + S
Sbjct: 425 QAARQASDRAAHGSSVVQHATREISQLAGEVGQLGEA--------------MQRLIQDSD 470
Query: 462 QIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKD 521
+I ++D I V+ QT +LA+N A+EAARAGE G+GFAVV+ ++++LA + +I+
Sbjct: 471 KIGGVIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQSSTTEIEA 530
Query: 522 QVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGG 581
+K++Q D S +M + R R V +++ ES
Sbjct: 531 LIKSLQ--------DGTGAASELMNAS-------------RQRTEGTVALARQAEESLLE 569
Query: 582 IERSIADARAGMQQIATAAEESSHATGE--------------AATAARQQSSSTSELASA 627
I SI QQI+ AAEE S T E +ATA Q ++ST ELA
Sbjct: 570 ITHSIVTIEQMSQQISAAAEEQSAVTDEINRSVISVRDIADQSATATEQSAASTVELARL 629
Query: 628 IENI 631
N+
Sbjct: 630 GSNL 633
Score = 43.9 bits (102), Expect = 2e-08
Identities = 77/383 (20%), Positives = 155/383 (40%), Gaps = 26/383 (6%)
Query: 266 VDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSL------DQQQI 319
V VK + L+ A + +A A S+ + A E+ LK L D +
Sbjct: 50 VSEVKADALSLRIAAQTYTAKPDA-SNSQGYTSALDNLGKTIEDGLKILTVPVNADMLRG 108
Query: 320 ALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEI-NRSSNEIMGALNQ 378
D A Q+ +L D R I ++ + + +E++S E + ++ +++ +L+Q
Sbjct: 109 IRDQAGVLKQTFSQLVDNNR---QIDQAMQPLITISEQVSGSFETLLQKTFDDVSRSLDQ 165
Query: 379 ISSGAQHMAKSVETGITSLTQIEQG--ARLGKERAESSLKACEKMLTGIEENKTTVDEMI 436
+A + G+T+ + + + E + + A + ++ + + +
Sbjct: 166 SGIDQVKIAGDLRNGMTNFRLVFRRYISIPTAENRQITFDAADSLIAQVGSARNQLPNKA 225
Query: 437 -LAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYG 495
A+ E+ A + + M +I ++ +Q D+I D + S+ A E AG+
Sbjct: 226 GPAVDEALAALQQYKSLMVSISQLMQQNDQIRDSLRQQSMDIVTSA-----EKLMAGQ-- 278
Query: 496 KGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTI 555
VVS + + + + + I I I R+ + STV+ A++ A
Sbjct: 279 ----VVSANKEKDSAVTQLLTVAVIVLLLGIFAAILITRQITRPLDSTVIA-ARRIADGD 333
Query: 556 KQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAAR 615
D +R ++ L + + I G+ QIATAAEE S + + +
Sbjct: 334 LTNDLSTTRQDELGLLQNTMQHMTVSLRTLIGGISNGVTQIATAAEELSAVSEQTSAGVT 393
Query: 616 QQSSSTSELASAIENIAAVADEL 638
QQ ++A+A+ +A+ E+
Sbjct: 394 QQKLEVDQVATAMNQMASTVQEV 416
Score = 30.0 bits (66), Expect = 3e-04
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 45 QQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFI 104
+Q E + + L E + ++ + +QI+ AEE S+ T + +V + +
Sbjct: 550 RQRTEGTVALARQAEESLLEITHSIVTIEQMSQQISAAAEEQSAVTDEINRSVISVRDIA 609
Query: 105 NEQATYATQSKQILTKLEQDIVDVANKINEMVS 137
++ AT QS +L + + + + +MV+
Sbjct: 610 DQSATATEQSAASTVELAR----LGSNLQDMVA 638
Score = 28.9 bits (63), Expect = 7e-04
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 24/144 (16%)
Query: 31 ADDLRRQARTLARKQQAAERVASATAE---LLAGLEESSSAMTQLRSSMEQIAVGAEESS 87
AD++R A+R S+T E L+ L++ + A ++L ++ Q E +
Sbjct: 511 ADEVRS----------LAQRTQSSTTEIEALIKSLQDGTGAASELMNASRQ---RTEGTV 557
Query: 88 SATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQ----TSS 143
+ +Q+E ++ ++ + I T S+QI E+ V ++IN V +V+ S+
Sbjct: 558 ALARQAEESLLEITHSI---VTIEQMSQQISAAAEEQSA-VTDEINRSVISVRDIADQSA 613
Query: 144 ERQNDSVKRMIELSEQAAKINDAV 167
S +EL+ + + D V
Sbjct: 614 TATEQSAASTVELARLGSNLQDMV 637