Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  109 bits (273), Expect = 3e-28
 Identities = 78/282 (27%), Positives = 135/282 (47%), Gaps = 20/282 (7%)

Query: 39  RTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVS 98
           RT+     A++++ASA  EL A  EES+  +T+    ++Q A              TAV+
Sbjct: 262 RTIQEISSASDQLASAAEELGAVTEESTRGLTRQNDEIQQAA--------------TAVN 307

Query: 99  QMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSE 158
           +M   + E A  A  + +    L  D  +   +++  V  + T      +S   +  L+ 
Sbjct: 308 EMTAAVEEVARNAVSTSEESKSLATDAANGRGQVDNTVKGIGTMVSEITESTGSVTTLAG 367

Query: 159 QAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAAN 218
               I+  ++ +  IA+QTNLLALNAAIEA RAG+ G+GFAVVAD VR LA + + +   
Sbjct: 368 HVRDISKVLEVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQASTVE 427

Query: 219 IESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKA 278
           IE +I  + +GA+     +  S   A +  +        L  I + +  + + + V+  A
Sbjct: 428 IEGMIGTVQSGADGAVAAMSKSLATATNTQELAQRAGSALEKITSGVGMINERNMVIASA 487

Query: 279 ADEMSSAA------VIALKGSESVSQAAQEQSAACEESLKSL 314
           ++E +  A      ++ ++   + S A   Q++A  + L  L
Sbjct: 488 SEEQAQVAREVDRNLVNIQELSAQSAAGANQTSASSQELSRL 529



 Score = 95.9 bits (237), Expect = 4e-24
 Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 23/284 (8%)

Query: 339 RTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLT 398
           RT  +I  +S+++A+AAEEL A  EE  R        + Q ++    M  +VE       
Sbjct: 262 RTIQEISSASDQLASAAEELGAVTEESTRGLTRQNDEIQQAATAVNEMTAAVE------- 314

Query: 399 QIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIER 458
              + AR     +E S    + + T     +  VD  +  I       TE+   +  +  
Sbjct: 315 ---EVARNAVSTSEES----KSLATDAANGRGQVDNTVKGIGTMVSEITESTGSVTTLAG 367

Query: 459 ISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQ 518
             R I K+++ I +++ QT +LA+N A+EAARAGE G+GFAVV+ +++ LA+    +  +
Sbjct: 368 HVRDISKVLEVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQASTVE 427

Query: 519 IKDQVKNIQE----QINIVRKDLADILSTVMEEAQKAALTIKQLDN----VRSRMSDVVL 570
           I+  +  +Q      +  + K LA   +T  E AQ+A   ++++ +    +  R   +  
Sbjct: 428 IEGMIGTVQSGADGAVAAMSKSLATATNT-QELAQRAGSALEKITSGVGMINERNMVIAS 486

Query: 571 GSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAA 614
            S+  ++ A  ++R++ + +    Q A  A ++S ++ E +  A
Sbjct: 487 ASEEQAQVAREVDRNLVNIQELSAQSAAGANQTSASSQELSRLA 530



 Score = 36.6 bits (83), Expect = 3e-06
 Identities = 17/64 (26%), Positives = 33/64 (51%)

Query: 575 ISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAV 634
           I    G ++R+I +  +   Q+A+AAEE    T E+     +Q+    + A+A+  + A 
Sbjct: 253 IGTMQGNLKRTIQEISSASDQLASAAEELGAVTEESTRGLTRQNDEIQQAATAVNEMTAA 312

Query: 635 ADEL 638
            +E+
Sbjct: 313 VEEV 316



 Score = 25.0 bits (53), Expect = 0.009
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 554 TIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATA 613
           TI+++ +   +++        ++E +    R +      +QQ ATA  E + A  E A  
Sbjct: 263 TIQEISSASDQLASAAEELGAVTEES---TRGLTRQNDEIQQAATAVNEMTAAVEEVARN 319

Query: 614 ARQQSSSTSELASAIEN 630
           A   S  +  LA+   N
Sbjct: 320 AVSTSEESKSLATDAAN 336