Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 661 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a
Score = 112 bits (280), Expect = 5e-29
Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 18/274 (6%)
Query: 57 ELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQ 116
+L+ + + +Q EQ +E + +A+++M + + E A A ++
Sbjct: 385 QLIGSADTLALTASQNAQISEQTTRVVDEQKDRLNSAASAMNEMESTVEEVARRAQDTRG 444
Query: 117 ILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQ 176
+ + V ++ E + N++ +E+ N + EL + I+ V + IA+Q
Sbjct: 445 AVDSTSELTGKVQKRVAETIVNIRQQAEQVNKASAVTDELQKYGQNIDGIVDAIRTIAEQ 504
Query: 177 TNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNG 236
TNLLALNAAIEA RAG+ G+GFAVVAD VR+LA + + + + I+ +I +M S
Sbjct: 505 TNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQTSTSEIQEMI------GQMQSKI 558
Query: 237 VKSSSQKAESEVQKGHVVN-----KQLTLIRNEMVDLVKDSEVLLKAADEMSSAAV---- 287
+ ES++Q H V QL + E VD+++D + + AA E SA V
Sbjct: 559 HSAVEVMNESQIQSDHCVTLASGADQLLVEMGEAVDVIRDMNIQIAAATEQQSATVQETS 618
Query: 288 -IALKGSESVSQAAQ--EQSAACEESLKSLDQQQ 318
+ ++S QAA EQSA + L + + Q
Sbjct: 619 RMVTHINDSAQQAADGAEQSAISSQDLSKMARDQ 652
Score = 89.0 bits (219), Expect = 6e-22
Identities = 68/295 (23%), Positives = 143/295 (48%), Gaps = 22/295 (7%)
Query: 331 LDELTDELR-TSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKS 389
L+E T L+ T ++ S++ +A A + + E+ R +E LN +S M +
Sbjct: 372 LNEFTQSLQQTFRQLIGSADTLALTASQNAQISEQTTRVVDEQKDRLNSAASAMNEMEST 431
Query: 390 VETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATEN 449
VE ++ + A+ + +S+ + K+ + E + + + +++ E
Sbjct: 432 VE-------EVARRAQDTRGAVDSTSELTGKVQKRVAETIVNIRQQAEQVNKASAVTDE- 483
Query: 450 LNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLA 509
+++ + ID IVD I ++ QT +LA+N A+EAARAGE G+GFAVV+ ++++LA
Sbjct: 484 ------LQKYGQNIDGIVDAIRTIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA 537
Query: 510 NDAAENAEQIKDQVKNIQEQINIVRKDL------ADILSTVMEEAQKAALTI-KQLDNVR 562
+ + +I++ + +Q +I+ + + +D T+ A + + + + +D +R
Sbjct: 538 SRTQTSTSEIQEMIGQMQSKIHSAVEVMNESQIQSDHCVTLASGADQLLVEMGEAVDVIR 597
Query: 563 SRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQ 617
+ +++ S + R + QQ A AE+S+ ++ + + AR Q
Sbjct: 598 DMNIQIAAATEQQSATVQETSRMVTHINDSAQQAADGAEQSAISSQDLSKMARDQ 652
Score = 64.3 bits (155), Expect = 2e-14
Identities = 58/287 (20%), Positives = 117/287 (40%), Gaps = 45/287 (15%)
Query: 105 NEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKIN 164
++ A + Q+ +++ + + + A+ +NEM S V+ + R D+ + SE K+
Sbjct: 398 SQNAQISEQTTRVVDEQKDRLNSAASAMNEMESTVEEVARRAQDTRGAVDSTSELTGKVQ 457
Query: 165 DAVKQ-VIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLI 223
V + +++I Q + +A+ K+G+ + D +RT+AE+ A N
Sbjct: 458 KRVAETIVNIRQQAEQVNKASAV-TDELQKYGQNIDGIVDAIRTIAEQTNLLALNA---- 512
Query: 224 KDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMS 283
+ E +G V ADE+
Sbjct: 513 ---------------AIEAARAGEQGRGFAV-----------------------VADEVR 534
Query: 284 SAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTD 343
S A + + + + + +++ +++ QI D VT A D+L E+ + D
Sbjct: 535 SLASRTQTSTSEIQEMIGQMQSKIHSAVEVMNESQIQSDHCVTLASGADQLLVEMGEAVD 594
Query: 344 IVKSSE-EVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKS 389
+++ ++AAA E+ SA ++E +R I + Q + GA+ A S
Sbjct: 595 VIRDMNIQIAAATEQQSATVQETSRMVTHINDSAQQAADGAEQSAIS 641
Score = 33.9 bits (76), Expect = 2e-05
Identities = 58/342 (16%), Positives = 133/342 (38%), Gaps = 23/342 (6%)
Query: 300 AQEQSAACEESLKSLDQQQIALD-GAVTAAQSLDELTDELRTSTDIVKSSEEVAAA-AEE 357
A+E++A E++ + +++ LD G + T ++T ++ +EV + E
Sbjct: 165 ARERNAGSAETVAA--GEKLLLDVGKSYEGLAAHAATPNIQTLQRVLNLQDEVISTRTRE 222
Query: 358 LSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKA 417
L A R ++ ++ L +G+ + ++ Q+++ ++ AE+ L+A
Sbjct: 223 LIAADPRAGRIASVMVNRLLNDLTGSDGVYQAYRQEAALAEQVDKQ----RQAAETRLQA 278
Query: 418 CEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQT 477
+ V A +ST A + +L +A + ++ I+ S++
Sbjct: 279 TLGKIGEFGNQSLAVANEAKAGADSTIATSLSLLLIACL--LAVMAAAIIGTWVAFSLRR 336
Query: 478 AMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDL 537
+ A ++ +G+ F V D + E + + +++Q+ +
Sbjct: 337 PLAAFREVLKTLTSGDMRVRFDVSRRD------EFGELGGYLNEFTQSLQQTFRQLIGSA 390
Query: 538 ADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIA 597
+ T + AQ + T + +D + R++ + + + R D R
Sbjct: 391 DTLALTASQNAQISEQTTRVVDEQKDRLNSAASAMNEMESTVEEVARRAQDTRG------ 444
Query: 598 TAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQ 639
A + +S TG+ + + + A + +AV DELQ
Sbjct: 445 -AVDSTSELTGKVQKRVAETIVNIRQQAEQVNKASAVTDELQ 485