Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  123 bits (308), Expect = 2e-32
 Identities = 94/347 (27%), Positives = 171/347 (49%), Gaps = 45/347 (12%)

Query: 23  SANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVG 82
           +A  P +  D++ + A+     Q   +RV +  ++    L++ ++    L + M+++  G
Sbjct: 184 AARVPNRSDDEVGQMAKAFNAMQAGYQRVVNTVSQTAGRLDQGAA---HLAAGMKEVRQG 240

Query: 83  AEESSSATKQSETAVSQMNNFINEQATYATQSK---QILTKLEQDIVDVANKINEMVSNV 139
                S T Q  TA+++M   ++  A +AT ++   Q    L      V +++   ++ +
Sbjct: 241 MLGQQSETDQVATAINEMTATVHHIAQHATATRDQSQTADALAGSGKVVVDRVQVSIAGL 300

Query: 140 QTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFA 199
            +  ++  + ++RM E S+   KIN  V  +  IA+QTNLLALNAAIEA RAG+ G+GFA
Sbjct: 301 SSGVQQTAEMIQRMAEDSQ---KINGVVNVIHSIAEQTNLLALNAAIEAARAGEMGRGFA 357

Query: 200 VVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLT 259
           VVAD VR LA++ + +   I +++  + +G     + ++ SS KAE  +Q+       L 
Sbjct: 358 VVADEVRNLAKRVQTSTDEITTMVSTLQSGTRDAVDFMQESSHKAEECLQQAREAGDALA 417

Query: 260 LIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSES-VSQAAQEQSAACEESLKSLDQQQ 318
            I                      + AV  ++ S + ++ AAQ+QS   EE         
Sbjct: 418 AI----------------------AGAVAQMRESNTQIAVAAQQQSQVAEE--------- 446

Query: 319 IALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEI 365
             ++ AV + + + E T  +  + D   +S+E+A  A EL+A I ++
Sbjct: 447 --MNRAVVSIRDVTERT--VIQTVDSASTSDELATLAGELNAAIGQL 489



 Score = 85.1 bits (209), Expect = 7e-21
 Identities = 68/303 (22%), Positives = 135/303 (44%), Gaps = 35/303 (11%)

Query: 339 RTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLT 398
           R    + +++  +   A  L+AG++E+ +         +Q+++    M  +V        
Sbjct: 211 RVVNTVSQTAGRLDQGAAHLAAGMKEVRQGMLGQQSETDQVATAINEMTATVH------- 263

Query: 399 QIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIER 458
            I Q A   +++++++       L G    K  VD + ++I   +    +    +  +  
Sbjct: 264 HIAQHATATRDQSQTA-----DALAG--SGKVVVDRVQVSIAGLSSGVQQTAEMIQRMAE 316

Query: 459 ISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQ 518
            S++I+ +V+ I +++ QT +LA+N A+EAARAGE G+GFAVV+ +++NLA     + ++
Sbjct: 317 DSQKINGVVNVIHSIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLAKRVQTSTDE 376

Query: 519 IKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISES 578
           I   V  +Q           D +  + E + KA   ++Q              ++   ++
Sbjct: 377 ITTMVSTLQ-------SGTRDAVDFMQESSHKAEECLQQ--------------AREAGDA 415

Query: 579 AGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
              I  ++A  R    QIA AA++ S    E   A       T        + A+ +DEL
Sbjct: 416 LAAIAGAVAQMRESNTQIAVAAQQQSQVAEEMNRAVVSIRDVTERTVIQTVDSASTSDEL 475

Query: 639 QSI 641
            ++
Sbjct: 476 ATL 478



 Score = 28.9 bits (63), Expect = 6e-04
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 11/120 (9%)

Query: 21  STSANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIA 80
           ST  +  +   D ++  +       Q A     A A +       + A+ Q+R S  QIA
Sbjct: 382 STLQSGTRDAVDFMQESSHKAEECLQQAREAGDALAAI-------AGAVAQMRESNTQIA 434

Query: 81  VGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQ 140
           V A++ S   ++   AV  + +           S         ++  +A ++N  +  ++
Sbjct: 435 VAAQQQSQVAEEMNRAVVSIRDVTERTVIQTVDS----ASTSDELATLAGELNAAIGQLK 490