Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 681 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a
Score = 115 bits (287), Expect = 8e-30
Identities = 76/272 (27%), Positives = 136/272 (50%), Gaps = 22/272 (8%)
Query: 50 RVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQAT 109
++A+A +L A E++S+ +T ++ ++Q+A E +S ++ + + +
Sbjct: 412 QIATAAEQLSAVSEQTSAGVTLQKNEVDQVATAMNEMASTVQEVARNTEDASQAAKQASE 471
Query: 110 YATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQ 169
A ++ ++I +A ++ ++ +Q L+E + KI +
Sbjct: 472 RAAHGSSVVQHATREIGQLAGEVQQLGEAMQ--------------RLTEDSGKIGSVIDV 517
Query: 170 VIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNG 229
+ +A+QTNLLALNAAIEA RAG+ G+GFAVVAD VR+LA++ + + IE+LI+ + G
Sbjct: 518 IKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQNSTTEIEALIQALQKG 577
Query: 230 AEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSA---- 285
S + +S Q+ E V + L I N+ + ++ + AA E SA
Sbjct: 578 TGAASGLMDASLQRTEGTVVLARQAEQALVEI-NQSIGTIEQMSQQISAAAEQQSAVTEE 636
Query: 286 ---AVIALKGSESVSQAAQEQSAACEESLKSL 314
+V++++ S +A EQSAA L L
Sbjct: 637 INRSVLSVRDIADQSASATEQSAASTVELARL 668
Score = 95.5 bits (236), Expect = 7e-24
Identities = 67/300 (22%), Positives = 144/300 (48%), Gaps = 35/300 (11%)
Query: 342 TDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIE 401
T I ++E+++A +E+ SAG+ +++ A+N+++S Q +A++ E + Q
Sbjct: 411 TQIATAAEQLSAVSEQTSAGVTLQKNEVDQVATAMNEMASTVQEVARNTEDASQAAKQAS 470
Query: 402 QGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISR 461
+ A G + + + ++ +++ + E+ + TE+ S
Sbjct: 471 ERAAHGSSVVQHATREIGQLAGEVQQ-----------LGEAMQRLTED----------SG 509
Query: 462 QIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKD 521
+I ++D I V+ QT +LA+N A+EAARAGE G+GFAVV+ ++++LA + +I+
Sbjct: 510 KIGSVIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQNSTTEIEA 569
Query: 522 QVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGG 581
++ +Q+ + ++ ++ + + +Q + I++S G
Sbjct: 570 LIQALQKGTGAA----SGLMDASLQRTEGTVVLARQAEQ----------ALVEINQSIGT 615
Query: 582 IERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQSI 641
IE+ A +Q + EE + + A Q +S+T + A++ +A + +LQS+
Sbjct: 616 IEQMSQQISAAAEQQSAVTEEINRSVLSVRDIADQSASATEQSAASTVELARLGSDLQSM 675
Score = 50.8 bits (120), Expect = 2e-10
Identities = 86/450 (19%), Positives = 182/450 (40%), Gaps = 38/450 (8%)
Query: 60 AGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILT 119
A + + + + Q+ ++ Q+ V E+++A + A+ Q + + Q++QI
Sbjct: 241 ATYKAADALIAQVDAARSQLPV---EANAAVDAALVALKQYKVLMTSISDMLQQTEQIRN 297
Query: 120 KLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNL 179
L+Q V A + +++ + S++++ + +++L A + + +
Sbjct: 298 DLQQQSVATAARADDLAALQVISAKKEQQTA--VVQLLSVALVVLLVGIFAAFLITRQIT 355
Query: 180 LALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKS 239
+ LN+ + A R G + D+ T ++ ++ + + + NGV
Sbjct: 356 VPLNSTVIAARRIADGD---LTHDSSTTRQDELGLLQNTMQHMTVSLRGLIGGIGNGVTQ 412
Query: 240 SSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQA 299
+ AE + +TL +NE+ + + E++ A + ++ S+
Sbjct: 413 IATAAEQLSAVSEQTSAGVTLQKNEVDQVATAMNEMASTVQEVARNTEDASQAAKQASER 472
Query: 300 AQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSEE------VAA 353
A S+ + + + + Q + A Q L E + ++ + D++K+ E + A
Sbjct: 473 AAHGSSVVQHATREIGQLAGEVQQLGEAMQRLTEDSGKIGSVIDVIKAVAEQTNLLALNA 532
Query: 354 AAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLG-----K 408
A E AG E R + + ++ Q+ +E I +L Q GA G
Sbjct: 533 AIEAARAG--EQGRGFAVVADEVRSLAQRTQNSTTEIEALIQAL-QKGTGAASGLMDASL 589
Query: 409 ERAESSL---KACEKMLTGIEENKTTVDEM---ILAITESTKAATENLNEMANIERISRQ 462
+R E ++ + E+ L I ++ T+++M I A E A TE +N R
Sbjct: 590 QRTEGTVVLARQAEQALVEINQSIGTIEQMSQQISAAAEQQSAVTEEIN------RSVLS 643
Query: 463 IDKIVDGISNVSIQTAMLAVNGAVEAARAG 492
+ I D ++ + Q+A VE AR G
Sbjct: 644 VRDIADQSASATEQSAA----STVELARLG 669
Score = 42.7 bits (99), Expect = 5e-08
Identities = 70/389 (17%), Positives = 161/389 (41%), Gaps = 38/389 (9%)
Query: 270 KDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQ--QQIALDGAVTA 327
K S+V AD +++ + + Q ++A + +S+DQ Q + +
Sbjct: 85 KSSKVAEIKADVLNARIAAQAYATGPTAAGVQNYASALDTLSRSVDQGLQVFVISSNLAK 144
Query: 328 AQSLDELTDELRTSTD---------------IVKSSEEVAAAAEELSAGIEEINRSSNEI 372
+ + E L+ + D I+K S++V+A E L +N++ ++
Sbjct: 145 LREIKEQVGGLKQTFDQLVGINQKVDEALKPIIKVSDDVSATFENL------LNKTIDDT 198
Query: 373 MGALNQISSGAQHMAKSVETGITSLTQIEQG--ARLGKERAESSLKACEKMLTGIEENKT 430
+ A N+ +A + G+T+ + + + + +++ KA + ++ ++ ++
Sbjct: 199 LRAPNETGIRQVKIAGDLRNGMTNFRLVFRRYLSVPNADNRQATYKAADALIAQVDAARS 258
Query: 431 TVDEMILAITESTKAATENLNE-MANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAA 489
+ A ++ A + M +I + +Q ++I + + S+ TA A + A
Sbjct: 259 QLPVEANAAVDAALVALKQYKVLMTSISDMLQQTEQIRNDLQQQSVATAARADDLAALQV 318
Query: 490 RAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQ 549
+ + + AVV + ++A + + I I R+ + STV+ A+
Sbjct: 319 ISAKKEQQTAVVQ--LLSVA---------LVVLLVGIFAAFLITRQITVPLNSTVIA-AR 366
Query: 550 KAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGE 609
+ A D+ +R ++ L + + I G+ QIATAAE+ S + +
Sbjct: 367 RIADGDLTHDSSTTRQDELGLLQNTMQHMTVSLRGLIGGIGNGVTQIATAAEQLSAVSEQ 426
Query: 610 AATAARQQSSSTSELASAIENIAAVADEL 638
+ Q + ++A+A+ +A+ E+
Sbjct: 427 TSAGVTLQKNEVDQVATAMNEMASTVQEV 455
Score = 26.9 bits (58), Expect = 0.003
Identities = 27/141 (19%), Positives = 60/141 (42%), Gaps = 14/141 (9%)
Query: 31 ADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSAT 90
AD++R A+R ++T E+ A ++ M+ E +
Sbjct: 550 ADEVRS----------LAQRTQNSTTEIEALIQALQKGTGAASGLMDASLQRTEGTVVLA 599
Query: 91 KQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSV 150
+Q+E A+ ++N I T S+QI EQ V +IN V +V+ +++ +
Sbjct: 600 RQAEQALVEINQSI---GTIEQMSQQISAAAEQQSA-VTEEINRSVLSVRDIADQSASAT 655
Query: 151 KRMIELSEQAAKINDAVKQVI 171
++ + + A++ ++ ++
Sbjct: 656 EQSAASTVELARLGSDLQSMV 676