Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  119 bits (297), Expect = 5e-31
 Identities = 89/321 (27%), Positives = 158/321 (49%), Gaps = 14/321 (4%)

Query: 3   LKKHITTSASSSFSPSNHSTSANAPKKE----ADDLRRQARTLARKQQAAERVASATAEL 58
           L K IT+   S+ S +    S++  K+      D+  R    LA  QQ         A+ 
Sbjct: 208 LTKTITSPIGSALSVAERIASSDLTKEVEVSGTDEAGRLLSALATMQQNLRSTIMQIADS 267

Query: 59  LAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQIL 118
            + L  +S  MT +    EQ ++G    +    Q+ TAV++M+  ++E A  A  + +  
Sbjct: 268 SSQLAAASEEMTAVT---EQSSLGLVSQNDEVNQAATAVTEMSAAVDEVARNAESASEES 324

Query: 119 TKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTN 178
            K +        ++++ + +++  S    D+ +++  LS +A  I+  V+ +  IA+QTN
Sbjct: 325 RKGQGYTEVGLERVSQTLKSIEKLSSNVRDTSEQITGLSNRAQNISKVVEVIRAIAEQTN 384

Query: 179 LLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVK 238
           LLALNAAIEA RAG+ G+GFAVVAD VR LA + + +   IE +I+ I N ++     + 
Sbjct: 385 LLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQVSTQEIEQMIQAIQNDSDQAVKAMA 444

Query: 239 SSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAA------VIALKG 292
           +S + A   +      +  L  I   +  + + + ++  A++E +  A      +++++ 
Sbjct: 445 TSRELAAESLSVAGDASSSLDQIATAITGINERNILIATASEEQAHVAREVDRNLVSIRE 504

Query: 293 SESVSQAAQEQSA-ACEESLK 312
             S S A   Q+A AC E  K
Sbjct: 505 LASQSSAGASQTASACNEMSK 525



 Score =  108 bits (269), Expect = 8e-28
 Identities = 98/446 (21%), Positives = 191/446 (42%), Gaps = 65/446 (14%)

Query: 219 IESLIK--DISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVL- 275
           +E L+K  D ++  ++V+ G++  + + E++V++    N +   +       V DS +  
Sbjct: 130 LEPLLKAGDTASIVKLVATGIRPLTNQMETQVEELTQFNNKGAALAGVQATQVYDSGLYI 189

Query: 276 ------------LKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDG 323
                       L  A  ++      +  + SV++         E  +   D+    L  
Sbjct: 190 VIGLIIFVALLTLCLATLLTKTITSPIGSALSVAERIASSDLTKEVEVSGTDEAGRLLSA 249

Query: 324 AVTAAQSLDELTDELR-TSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSG 382
             T  Q+L     ++  +S+ +  +SEE+ A  E+ S G+   N   N+   A+ ++S+ 
Sbjct: 250 LATMQQNLRSTIMQIADSSSQLAAASEEMTAVTEQSSLGLVSQNDEVNQAATAVTEMSAA 309

Query: 383 AQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITES 442
              +A++ E+      + +    +G ER   +LK+ EK+ + + +               
Sbjct: 310 VDEVARNAESASEESRKGQGYTEVGLERVSQTLKSIEKLSSNVRDTS------------- 356

Query: 443 TKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVS 502
                    ++  +   ++ I K+V+ I  ++ QT +LA+N A+EAARAGE G+GFAVV+
Sbjct: 357 --------EQITGLSNRAQNISKVVEVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVA 408

Query: 503 TDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVR 562
            +++ LA+    + ++I+  ++ IQ   +   K +A       E    A      LD + 
Sbjct: 409 DEVRALAHRTQVSTQEIEQMIQAIQNDSDQAVKAMATSRELAAESLSVAGDASSSLDQIA 468

Query: 563 SRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEA-------ATAAR 615
           + ++             G  ER+I         IATA+EE +H   E           A 
Sbjct: 469 TAIT-------------GINERNIL--------IATASEEQAHVAREVDRNLVSIRELAS 507

Query: 616 QQSSSTSELASAIENIAAVADELQSI 641
           Q S+  S+ ASA   ++ +A  L  +
Sbjct: 508 QSSAGASQTASACNEMSKLAVSLNQL 533