Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  134 bits (336), Expect = 2e-35
 Identities = 82/273 (30%), Positives = 144/273 (52%), Gaps = 4/273 (1%)

Query: 45  QQAAERVASATAELLAGLEES----SSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQM 100
           QQ  +R+ +   EL+ G+ +S    +SA  +L +  EQ + G       T Q  TA+ +M
Sbjct: 348 QQGIQRMGTTLRELIGGIRDSVVQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEM 407

Query: 101 NNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQA 160
           +  + E A  A Q+ Q  +  +++  D    + E ++ ++  +     SV  M EL +++
Sbjct: 408 SATVAEVARNAEQASQAASNADREARDGDKVVGEAIAQIERLANEVGRSVDAMTELEQES 467

Query: 161 AKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIE 220
            KI   +  +  +A+QTNLLALNAAIEA RAG+ G+GFAVVAD VR LA++ +++   IE
Sbjct: 468 DKIGKVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTVEIE 527

Query: 221 SLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAAD 280
           +L+  + +G   VS+ + +S +   S V         L  I   +  +   ++ +  AA+
Sbjct: 528 TLVAALQSGTRQVSSIMLNSRELTVSSVTLSRQAGTSLGSITQTVSSIQAMNQQIAAAAE 587

Query: 281 EMSSAAVIALKGSESVSQAAQEQSAACEESLKS 313
           E S+ A    +   +V   +++ ++A EE+  S
Sbjct: 588 EQSAVAEEISRSIVNVRDVSEQTASASEETAAS 620



 Score =  109 bits (273), Expect = 3e-28
 Identities = 137/626 (21%), Positives = 268/626 (42%), Gaps = 93/626 (14%)

Query: 59  LAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNF--INEQATYATQSKQ 116
           ++ +   ++ +T+LR +  Q  V   +     K +ET  + +++F    E+   + +S +
Sbjct: 46  MSDITSLNAQLTKLRVTRLQYMVADGDE----KVAETVQTSLDSFKAYQEKLRASFKSPE 101

Query: 117 ILTKLEQ---DIVDVANKINEMVSNVQTSSERQND----SVKRMIELSEQAAKINDAVKQ 169
            L  L+Q    I D    +N M S  + S+  +++    +VK +    +   ++ +    
Sbjct: 102 NLKMLDQLGIVIADYQKSLNNMRSGYKASTAARDELTTHAVKSLAVFEQLVTEVRNMDPA 161

Query: 170 VIHIADQTNLLALNAAIEAGRAGKHGKGFAVVA--DTVRTLAEKAEKNAANIESLIKDIS 227
             +  +Q  L+  +A  +   A    +G+   A  +T +    K +    ++++L    S
Sbjct: 162 DANRFEQYRLVT-DAKDDLRLARYEVRGYTTNATPETEQAAVSKLDSAIKDLDALKTTFS 220

Query: 228 NGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMV----DLVKDSEVLLKAA---- 279
                    +++S     + +Q        +   R EM     D+VK SE + K      
Sbjct: 221 GTQADQLRQLETSLMAYRTTLQNFKAATGTIVQARKEMTTQGQDIVKISEDMYKLQLDRR 280

Query: 280 DEMSSAA----------------VIALKGSESVSQAAQEQSAACEE----------SLKS 313
           D+ S+ A                + A+  +  +++  +E  A  +           ++  
Sbjct: 281 DQESAQARTTQITCTLLAIILGIIAAVIITRQITRPLRETLAVVDRIASGDLTQTLAVTR 340

Query: 314 LDQQQIALDGAVTAAQSLDELTDELRTST-DIVKSSEEVAAAAEELSAGIEEINRSSNEI 372
            D+  +   G      +L EL   +R S   I  ++EE++A  E+ SAG+      ++++
Sbjct: 341 SDELGVLQQGIQRMGTTLRELIGGIRDSVVQIASAAEELSAVTEQTSAGVNSQKVETDQV 400

Query: 373 MGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTV 432
             A++++S+    +A++ E    + +  ++ AR G +                      V
Sbjct: 401 ATAMHEMSATVAEVARNAEQASQAASNADREARDGDK---------------------VV 439

Query: 433 DEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAG 492
            E I  I         +++ M  +E+ S +I K++D I  V+ QT +LA+N A+EAARAG
Sbjct: 440 GEAIAQIERLANEVGRSVDAMTELEQESDKIGKVMDVIKAVAEQTNLLALNAAIEAARAG 499

Query: 493 EYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAA 552
           E G+GFAVV+ +++ LA    ++  +I+  V  +Q     V        S++M       
Sbjct: 500 EAGRGFAVVADEVRGLAQRTQQSTVEIETLVAALQSGTRQV--------SSIM------- 544

Query: 553 LTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAAT 612
                L++    +S V L S++   S G I ++++  +A  QQIA AAEE S    E + 
Sbjct: 545 -----LNSRELTVSSVTL-SRQAGTSLGSITQTVSSIQAMNQQIAAAAEEQSAVAEEISR 598

Query: 613 AARQQSSSTSELASAIENIAAVADEL 638
           +       + + ASA E  AA + EL
Sbjct: 599 SIVNVRDVSEQTASASEETAASSVEL 624