Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  110 bits (276), Expect = 1e-28
 Identities = 92/306 (30%), Positives = 159/306 (51%), Gaps = 43/306 (14%)

Query: 29  KEADDLRRQARTLARKQQAAERVASA-TAELLAGLEESSSAMTQLRSSMEQIAVGAEESS 87
           K  +D  RQ RT+    +   R   A  A   A L+  ++AM Q+ +++ ++A  AE SS
Sbjct: 227 KSINDATRQIRTVVESFRTNARDGQALAASQRAHLDSLATAMEQMTAAVREVASNAEHSS 286

Query: 88  SATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQN 147
             T+++   V             A  SK I T +   I  ++N+I            R +
Sbjct: 287 QETQEANQQV-------------AAGSKDIATTVSA-IGQLSNEI-----------ARAS 321

Query: 148 DSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRT 207
           D+V     L+E A++I++ V  +  I++QTNLLALNAAIEA RAG+ G+GFAVVAD VRT
Sbjct: 322 DAVT---VLNENASRIDEVVTTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRT 378

Query: 208 LAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVV--NKQLTLIRNEM 265
           LA + +     I+S+I+ + +G+  ++  +  + ++AE    K HV+   + L  I +  
Sbjct: 379 LAGRTQAATVEIKSMIEALQSGSRNLTQVMARTVEQAEE--GKKHVIKTGEDLDSIAHHS 436

Query: 266 VDLVKDSEVLLKAADEMSSAA------VIALKG-SESVSQAAQEQSAACEE---SLKSLD 315
             + + S ++  +A+E S+ A      ++ ++  S  V Q+A +  + C+E   + + LD
Sbjct: 437 AKVFEMSVLIATSAEEQSAVANEIAGNLMEIRNQSHDVEQSANQSVSGCDELHATAEKLD 496

Query: 316 QQQIAL 321
           +  + L
Sbjct: 497 KLLVGL 502



 Score = 84.0 bits (206), Expect = 2e-20
 Identities = 79/322 (24%), Positives = 146/322 (45%), Gaps = 26/322 (8%)

Query: 320 ALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQI 379
           A DG +T   +  ++ DE      +  S + +      L   I +  R    ++ +    
Sbjct: 190 AADGDLTGRLNFFQVKDEFSI---LAISIDSLVERQHNLVKSINDATRQIRTVVESFRTN 246

Query: 380 SSGAQHMAKSVETGITSL-TQIEQGARLGKERA-------ESSLKACEKMLTGIEENKTT 431
           +   Q +A S    + SL T +EQ     +E A       + + +A +++  G ++  TT
Sbjct: 247 ARDGQALAASQRAHLDSLATAMEQMTAAVREVASNAEHSSQETQEANQQVAAGSKDIATT 306

Query: 432 VDEMILAITESTKA--ATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAA 489
           V  +     E  +A  A   LNE A+      +ID++V  I+ +S QT +LA+N A+EAA
Sbjct: 307 VSAIGQLSNEIARASDAVTVLNENAS------RIDEVVTTINAISEQTNLLALNAAIEAA 360

Query: 490 RAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQ 549
           RAGE G+GFAVV+ +++ LA        +IK  ++ +Q       ++L  +++  +E+A+
Sbjct: 361 RAGEQGRGFAVVADEVRTLAGRTQAATVEIKSMIEALQSG----SRNLTQVMARTVEQAE 416

Query: 550 KAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGE 609
           +     K +      +  +   S ++ E +  I  S  +  A   +IA    E  + + +
Sbjct: 417 EGK---KHVIKTGEDLDSIAHHSAKVFEMSVLIATSAEEQSAVANEIAGNLMEIRNQSHD 473

Query: 610 AATAARQQSSSTSELASAIENI 631
              +A Q  S   EL +  E +
Sbjct: 474 VEQSANQSVSGCDELHATAEKL 495