Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., methyl-accepting chemotaxis protein from Pseudomonas fluorescens SBW25-INTG

 Score =  123 bits (308), Expect = 2e-32
 Identities = 100/347 (28%), Positives = 167/347 (48%), Gaps = 45/347 (12%)

Query: 23  SANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVG 82
           SA  P    D++ + A      Q   +RV +  A     L+E ++   +L SSM ++  G
Sbjct: 186 SARVPLACKDEVGQMASAFNAMQAGYQRVVNTVARTARQLDEGAA---RLASSMNEVQHG 242

Query: 83  AEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTS 142
                S T Q+ TA+++M   ++  A +A  ++     L Q    +A    E+V+ VQ S
Sbjct: 243 MLGQQSETDQAATAINEMTATVHHIAQHAGATRD----LSQTADTLAGSGQEVVTRVQRS 298

Query: 143 SERQNDSVKRMIE----LSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGF 198
               +  V++  E    L+E + KIN  V  +  IA+QTNLLALNAAIEA RAG+ G+GF
Sbjct: 299 IAGLSTGVQQTAEMIQKLAEDSQKINGVVSVIHSIAEQTNLLALNAAIEAARAGEMGRGF 358

Query: 199 AVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQL 258
           AVVAD VR LA++ + +   I  ++  + +G     + ++ SS KA+             
Sbjct: 359 AVVADEVRNLAKRVQSSTDEITRMVSALQDGTRDAVDFMQESSFKAD------------- 405

Query: 259 TLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQ 318
                   D V+ ++    A  E++ A     + +  ++ AA++QS   EE         
Sbjct: 406 --------DCVQQAQEAGAALAEITGAVAQMRESNTQIAVAAEQQSHVAEE--------- 448

Query: 319 IALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEI 365
             ++ AV + + + E T  ++ + D   +S E+A  A ELS  I ++
Sbjct: 449 --MNRAVVSIRDVTENT--VQQTVDSATTSNELATLAGELSKAIGQL 491



 Score = 87.4 bits (215), Expect = 1e-21
 Identities = 70/291 (24%), Positives = 130/291 (44%), Gaps = 28/291 (9%)

Query: 351 VAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKER 410
           VA  A +L  G   +  S NE+   +    S     A ++     ++  I Q A   ++ 
Sbjct: 218 VARTARQLDEGAARLASSMNEVQHGMLGQQSETDQAATAINEMTATVHHIAQHAGATRDL 277

Query: 411 AESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGI 470
           ++++    + +    +E  T V   I  ++   +   E + ++A     S++I+ +V  I
Sbjct: 278 SQTA----DTLAGSGQEVVTRVQRSIAGLSTGVQQTAEMIQKLAED---SQKINGVVSVI 330

Query: 471 SNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQI 530
            +++ QT +LA+N A+EAARAGE G+GFAVV+ +++NLA     + ++I   V  +Q+  
Sbjct: 331 HSIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLAKRVQSSTDEITRMVSALQD-- 388

Query: 531 NIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADAR 590
                   D +  + E + KA   ++Q     + +++              I  ++A  R
Sbjct: 389 -----GTRDAVDFMQESSFKADDCVQQAQEAGAALAE--------------ITGAVAQMR 429

Query: 591 AGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQSI 641
               QIA AAE+ SH   E   A       T        + A  ++EL ++
Sbjct: 430 ESNTQIAVAAEQQSHVAEEMNRAVVSIRDVTENTVQQTVDSATTSNELATL 480