Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., methyl-accepting chemotaxis protein from Pseudomonas fluorescens SBW25-INTG

 Score =  120 bits (301), Expect = 2e-31
 Identities = 81/281 (28%), Positives = 140/281 (49%), Gaps = 20/281 (7%)

Query: 40  TLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQ 99
           TL     A++++ASA  EL A  +ESS  +T+    ++Q A              TAV+Q
Sbjct: 261 TLVEIANASDQLASAAEELSAVTDESSRGLTRQNDEIQQAA--------------TAVNQ 306

Query: 100 MNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQ 159
           M   ++E A+ A  + +   +   +  D   ++ + VS + +     NDS + + +L+ Q
Sbjct: 307 MTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQAVSGMSSMVVEINDSTQSVADLAGQ 366

Query: 160 AAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANI 219
             +I   +  +  IADQTNLLALNAAIEA RAG+ G+GFAVVAD VR LA + + +  +I
Sbjct: 367 VREIGKVIDVIRSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQTSTVDI 426

Query: 220 ESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAA 279
           E +I ++  GA+     +  S   A +         + L  I   +  + + + V+  A+
Sbjct: 427 EKMIGEVQTGADGAVAAMNKSLNWANNTQTLAQNAGEALQRITASVAKINERNLVIASAS 486

Query: 280 DEMSSAA------VIALKGSESVSQAAQEQSAACEESLKSL 314
           +E +  A      ++ ++   + + A   Q++A  + L  L
Sbjct: 487 EEQAQVAREVDRNLLNIQDLSTQTAAGAHQTSASSQDLSRL 527



 Score = 99.8 bits (247), Expect = 3e-25
 Identities = 80/342 (23%), Positives = 160/342 (46%), Gaps = 27/342 (7%)

Query: 296 VSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDEL----RTSTDIVKSSEEV 351
           ++QA Q      +  L     Q I  +    A Q L  L+D       T  +I  +S+++
Sbjct: 217 IAQAVQSAQRIAKGDLT----QAITTERTDEAGQLLVALSDMQGGLKSTLVEIANASDQL 272

Query: 352 AAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERA 411
           A+AAEELSA  +E +R        + Q ++    M  +V+   ++     + +R     A
Sbjct: 273 ASAAEELSAVTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEA 332

Query: 412 ESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGIS 471
           E   +  E+ ++G+         M++ I +ST++  +   ++       R+I K++D I 
Sbjct: 333 EDGRQQVEQAVSGMSS-------MVVEINDSTQSVADLAGQV-------REIGKVIDVIR 378

Query: 472 NVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQE--- 528
           +++ QT +LA+N A+EAARAGE G+GFAVV+ +++ LA+    +   I+  +  +Q    
Sbjct: 379 SIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQTSTVDIEKMIGEVQTGAD 438

Query: 529 -QINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIA 587
             +  + K L +  +     AQ A   ++++    +++++  L     SE    + R + 
Sbjct: 439 GAVAAMNKSL-NWANNTQTLAQNAGEALQRITASVAKINERNLVIASASEEQAQVAREVD 497

Query: 588 DARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIE 629
                +Q ++T     +H T  ++    + ++S + L S  +
Sbjct: 498 RNLLNIQDLSTQTAAGAHQTSASSQDLSRLATSFNVLVSKFQ 539



 Score = 54.3 bits (129), Expect = 1e-11
 Identities = 114/550 (20%), Positives = 228/550 (41%), Gaps = 89/550 (16%)

Query: 53  SATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYAT 112
           S TA  L GL   +  + +L  + +      E S+   ++    ++Q       QA YAT
Sbjct: 48  SNTAATLNGLVAHNRGLYRLMDASK-----GEVSAQDRERVRQDIAQ--ELKRSQAAYAT 100

Query: 113 QSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIH 172
                 T LE D     +K+++++    +SSER   S+    ++ E   ++N    +V  
Sbjct: 101 YRA---TPLEDDERAAGDKLDQILPTYISSSERIM-SLLDGNQVDEARTQLNTTNNEVFR 156

Query: 173 IADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEK--------AEKNAANIESLIK 224
            A +     +   IE+    +  K  AV AD +R  A          A   A  +  LI 
Sbjct: 157 QAREL----IRVMIESNN--RQIKEGAVAADELRNSALTWMISGIVLAFIIALTVGVLIT 210

Query: 225 DISNGAEMVSNGVKSSSQKAESEVQKGHVVNK-----QLTLIRNEMVDLVKDSEV-LLKA 278
            +      ++  V+S+ + A+ ++ +     +     QL +  ++M   +K + V +  A
Sbjct: 211 RLIT--RPIAQAVQSAQRIAKGDLTQAITTERTDEAGQLLVALSDMQGGLKSTLVEIANA 268

Query: 279 ADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDEL 338
           +D+++SAA      ++  S+    Q+   +++  +++Q   A+D   + A S  E + + 
Sbjct: 269 SDQLASAAEELSAVTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQ- 327

Query: 339 RTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQ--HMAKSV--ETGI 394
             +T+     ++V  A   +S+ + EIN S+  +     Q+    +   + +S+  +T +
Sbjct: 328 -ATTEAEDGRQQVEQAVSGMSSMVVEINDSTQSVADLAGQVREIGKVIDVIRSIADQTNL 386

Query: 395 TSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMA 454
            +L    + AR G++    ++ A E                + A+   T+ +T       
Sbjct: 387 LALNAAIEAARAGEQGRGFAVVADE----------------VRALAHRTQTST------V 424

Query: 455 NIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAE 514
           +IE++  ++    DG        A+ A+N ++  A              + Q LA +A E
Sbjct: 425 DIEKMIGEVQTGADG--------AVAAMNKSLNWA-------------NNTQTLAQNAGE 463

Query: 515 NAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKR 574
             ++I   V  I E+ N+V      I S   E+AQ A    + L N++   +    G+ +
Sbjct: 464 ALQRITASVAKINER-NLV------IASASEEQAQVAREVDRNLLNIQDLSTQTAAGAHQ 516

Query: 575 ISESAGGIER 584
            S S+  + R
Sbjct: 517 TSASSQDLSR 526



 Score = 42.0 bits (97), Expect = 7e-08
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 575 ISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAV 634
           +S+  GG++ ++ +      Q+A+AAEE S  T E++    +Q+    + A+A+  + A 
Sbjct: 251 LSDMQGGLKSTLVEIANASDQLASAAEELSAVTDESSRGLTRQNDEIQQAATAVNQMTAA 310

Query: 635 ADELQS 640
            DE+ S
Sbjct: 311 VDEVAS 316



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 526 IQEQINIVRKDLADILSTVM-EEAQKAALTIKQLDN-VRSRMSDVVLGSKRISESAGGIE 583
           +Q    I + DL   ++T   +EA +  + +  +   ++S + ++   S +++ +A  + 
Sbjct: 221 VQSAQRIAKGDLTQAITTERTDEAGQLLVALSDMQGGLKSTLVEIANASDQLASAAEELS 280

Query: 584 RSIADARAGM-------QQIATAAEESSHATGEAATAARQQSSSTSELASAIEN 630
               ++  G+       QQ ATA  + + A  E A+ A   S ++ +  +  E+
Sbjct: 281 AVTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAED 334