Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  121 bits (303), Expect = 8e-32
 Identities = 84/298 (28%), Positives = 150/298 (50%), Gaps = 24/298 (8%)

Query: 34  LRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQS 93
           + RQ + ++R  QA+ ++ +         +E  +   + R  ++ +A   EE ++A K+ 
Sbjct: 215 VERQHQLVSRMTQASSQIRTVVQAFRQTAQEGQTLAAEQRQHLDSLATAMEEMTAAVKEV 274

Query: 94  ETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRM 153
                Q +N   E         + +    Q I D+AN+I +  + V T            
Sbjct: 275 ARNAEQSSNETQEANQQVEAGSKDIAITVQAIGDLANEIGDASTAVNT------------ 322

Query: 154 IELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAE 213
             L++ AAKI++ V  +  I++QTNLLALNAAIEA RAG+ G+GFAVVAD VRTLA + +
Sbjct: 323 --LNDNAAKIDEVVTTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQ 380

Query: 214 KNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSE 273
                I+S+I+ +  G+  ++  +K + +KA+   Q      + L  I +    + + S 
Sbjct: 381 AATVEIKSMIEALQTGSHALTQVMKRTVEKAQDGKQHVLETGEDLKAIAHHSERVYEMSV 440

Query: 274 VLLKAADEMSSAA------VIALKG-SESVSQAAQEQSAACEE---SLKSLDQQQIAL 321
           ++  +A+E S+ A      ++ ++  S  V Q+A +  + C+E   + + LDQ  + L
Sbjct: 441 LIATSAEEQSAVANEIATNLMEIRNQSHDVEQSANQSVSGCDELHATAEQLDQLLVGL 498



 Score = 84.0 bits (206), Expect = 1e-20
 Identities = 77/319 (24%), Positives = 151/319 (47%), Gaps = 20/319 (6%)

Query: 320 ALDGAVTAAQSLDELTDE---LRTSTD-IVKSSEEVAAAAEELSAGIEEINRSSNEIMGA 375
           A DG +T   +  E+ DE   L  S D +V+   ++ +   + S+ I  + ++  +    
Sbjct: 186 AADGDLTGRLNFFEVKDEFSILAVSIDTLVERQHQLVSRMTQASSQIRTVVQAFRQTAQE 245

Query: 376 LNQISSGAQHMAKSVETGITSLTQ-IEQGARLGKERAESSLKACEKMLTGIEENKTTVDE 434
              +++  +    S+ T +  +T  +++ AR  ++ +  + +A +++  G ++   TV  
Sbjct: 246 GQTLAAEQRQHLDSLATAMEEMTAAVKEVARNAEQSSNETQEANQQVEAGSKDIAITVQA 305

Query: 435 MILAITESTKAAT--ENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAG 492
           +     E   A+T    LN+ A       +ID++V  I+ +S QT +LA+N A+EAARAG
Sbjct: 306 IGDLANEIGDASTAVNTLNDNA------AKIDEVVTTINAISEQTNLLALNAAIEAARAG 359

Query: 493 EYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAA 552
           E G+GFAVV+ +++ LA        +IK  ++ +Q   +     L  ++   +E+AQ   
Sbjct: 360 EQGRGFAVVADEVRTLAGRTQAATVEIKSMIEALQTGSHA----LTQVMKRTVEKAQDGK 415

Query: 553 LTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAAT 612
             + +       +  +   S+R+ E +  I  S  +  A   +IAT   E  + + +   
Sbjct: 416 QHVLE---TGEDLKAIAHHSERVYEMSVLIATSAEEQSAVANEIATNLMEIRNQSHDVEQ 472

Query: 613 AARQQSSSTSELASAIENI 631
           +A Q  S   EL +  E +
Sbjct: 473 SANQSVSGCDELHATAEQL 491