Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 581 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  128 bits (321), Expect = 8e-34
 Identities = 106/343 (30%), Positives = 161/343 (46%), Gaps = 20/343 (5%)

Query: 3   LKKHITTSASSSFSPSNHSTSANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGL 62
           LK  I  +   S   +     A A  +EA++ RRQA +  R     E +  A  +L   +
Sbjct: 255 LKSKIAEAEDKSRQAAAKEQEALAAMREAEEARRQAESARR-----EGMLQAAQKLEGVV 309

Query: 63  EESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQI---LT 119
           E  SSA  +L + +EQ   G EE +    ++ TA+ +MN  + E A  A  +  +     
Sbjct: 310 EVVSSASEELSAQIEQSDRGTEEQARRVAETATAMEEMNASVLEVARNAGGAADVSENAR 369

Query: 120 KLEQDIVDVANKINEMVSNVQTSSERQNDSVKR-MIELSEQAAKINDAVKQVIHIADQTN 178
           ++  +   +  K+ + +  VQ    +Q+ ++KR M EL  QA  I   +  +  IADQTN
Sbjct: 370 RMADEGSAIVGKVVDGIGQVQ----QQSLALKRDMEELGRQAESIGQIMNVISDIADQTN 425

Query: 179 LLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVK 238
           LLALNAAIEA RAG  G+GFAVVAD VR LAEK       + + ++ I  G       V 
Sbjct: 426 LLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMHATQEVGAAVRGIQQGTRTNMEHVD 485

Query: 239 SSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQ 298
            S    E          + L  I    VD   D    +  A E  SAA      SE +++
Sbjct: 486 RSVGTIEEATDLARRSGESLREI-VRFVDAAADQVRGIATASEQQSAA------SEEINR 538

Query: 299 AAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTS 341
           A ++ SA   E+ +++ +   A++     +Q L  L +EL+ S
Sbjct: 539 AVEQVSAISAETAQAMREAATAVNELANQSQVLKRLVEELKQS 581



 Score =  112 bits (280), Expect = 5e-29
 Identities = 104/461 (22%), Positives = 201/461 (43%), Gaps = 36/461 (7%)

Query: 201 VADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTL 260
           V  T    A    K      S ++ +    E+   G   S  + E+EV     VN  L L
Sbjct: 133 VRKTDEARAVSVGKARPAFRSALQGVLELVELNDKGASDSGSQIENEVTTARTVNMVLVL 192

Query: 261 -------------IRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAAC 307
                        IR+ +  L +D   L   + +++ A  +A++   S  +   +     
Sbjct: 193 ASLGLGITATLYIIRSTLAQLGEDPGYLYDVSRQIA-AGNLAVQFRSSRYKGVYDAMQQM 251

Query: 308 EESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSEE-----VAAAAEELSAGI 362
             +LKS   +  A D +  AA    E    +R + +  + +E      +  AA++L   +
Sbjct: 252 VGTLKSKIAE--AEDKSRQAAAKEQEALAAMREAEEARRQAESARREGMLQAAQKLEGVV 309

Query: 363 EEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKML 422
           E ++ +S E+   + Q   G +  A+ V    T++ ++          A  +    E   
Sbjct: 310 EVVSSASEELSAQIEQSDRGTEEQARRVAETATAMEEMNASVLEVARNAGGAADVSENAR 369

Query: 423 TGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAV 482
              +E    V +++  I +  + +     +M  + R +  I +I++ IS+++ QT +LA+
Sbjct: 370 RMADEGSAIVGKVVDGIGQVQQQSLALKRDMEELGRQAESIGQIMNVISDIADQTNLLAL 429

Query: 483 NGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILS 542
           N A+EAARAG+ G+GFAVV+ +++ LA       +++   V+ IQ+              
Sbjct: 430 NAAIEAARAGDAGRGFAVVADEVRKLAEKTMHATQEVGAAVRGIQQGTR----------- 478

Query: 543 TVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADA----RAGMQQIAT 598
           T ME   ++  TI++  ++  R  + +    R  ++A    R IA A     A  ++I  
Sbjct: 479 TNMEHVDRSVGTIEEATDLARRSGESLREIVRFVDAAADQVRGIATASEQQSAASEEINR 538

Query: 599 AAEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQ 639
           A E+ S  + E A A R+ +++ +ELA+  + +  + +EL+
Sbjct: 539 AVEQVSAISAETAQAMREAATAVNELANQSQVLKRLVEELK 579