Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 587 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  120 bits (301), Expect = 2e-31
 Identities = 96/303 (31%), Positives = 151/303 (49%), Gaps = 21/303 (6%)

Query: 41  LARKQQAA--ERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVS 98
           +ARK   A  E + SA + L   +E+ SS+ T+L + +EQ + GAEE +    ++ TA+ 
Sbjct: 292 VARKDAEAKGEAILSAVSRLEVVMEQLSSSSTELAAQVEQASRGAEEQTRRVSETATAME 351

Query: 99  QMNNFINEQATYATQS----KQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMI 154
           +MN  + E A  AT++    +   T+ E     V NK    ++ V+  +E   D + R  
Sbjct: 352 EMNATVLEVARNATEASDNARNARTRAESG-AQVVNKAVHAINVVRRQAEALKDDMGR-- 408

Query: 155 ELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEK 214
            L  QA  I   +  +  IADQTNLLALNAAIEA RAG  G+GFAVVAD VR LAEK   
Sbjct: 409 -LGSQAESIGQIMNVITDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMN 467

Query: 215 NAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVK---- 270
               +   I+ I + A      V      A   + +   ++ +   +  E+V+LV+    
Sbjct: 468 ATKEVGDSIRAIQDSARTSMQSVDG----AVGTIGEATTLSGESGTVLGEIVNLVQVAAD 523

Query: 271 DSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKS---LDQQQIALDGAVTA 327
               +  A+ + S+A+    +  E +++ + E S A   S ++   L QQ   L+  V A
Sbjct: 524 QVNAIATASSQQSTASDEINRSIEDINRISSETSQAMRHSAQAIGELAQQTQELENLVRA 583

Query: 328 AQS 330
            ++
Sbjct: 584 LRN 586



 Score =  110 bits (275), Expect = 2e-28
 Identities = 88/358 (24%), Positives = 172/358 (48%), Gaps = 36/358 (10%)

Query: 281 EMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRT 340
           EM +  V ALKG+E  S+ A+ ++   E + K++ + ++A   A    +++      L  
Sbjct: 257 EMVTKIVAALKGAEQKSREAELEA---ERARKAMAEAEVARKDAEAKGEAILSAVSRLEV 313

Query: 341 STD-IVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQ 399
             + +  SS E+AA  E+ S G EE  R  +E   A+ ++++    +A++        T+
Sbjct: 314 VMEQLSSSSTELAAQVEQASRGAEEQTRRVSETATAMEEMNATVLEVARNA-------TE 366

Query: 400 IEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERI 459
               AR  + RAES  +               V++ + AI    + A    ++M  +   
Sbjct: 367 ASDNARNARTRAESGAQV--------------VNKAVHAINVVRRQAEALKDDMGRLGSQ 412

Query: 460 SRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQI 519
           +  I +I++ I++++ QT +LA+N A+EAARAG+ G+GFAVV+ +++ LA       +++
Sbjct: 413 AESIGQIMNVITDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMNATKEV 472

Query: 520 KDQVKNIQEQINIVRKDLADILSTVMEE---AQKAALTIKQLDNV----RSRMSDVVLGS 572
            D ++ IQ+      + +   + T+ E    + ++   + ++ N+      +++ +   S
Sbjct: 473 GDSIRAIQDSARTSMQSVDGAVGTIGEATTLSGESGTVLGEIVNLVQVAADQVNAIATAS 532

Query: 573 KRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIEN 630
            + S ++  I RSI D      + + A   S+ A GE A    QQ+     L  A+ N
Sbjct: 533 SQQSTASDEINRSIEDINRISSETSQAMRHSAQAIGELA----QQTQELENLVRALRN 586



 Score = 28.5 bits (62), Expect = 9e-04
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 565 MSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAA--------RQ 616
           ++ +V   K   + +   E     AR  M + A  A + + A GEA  +A         Q
Sbjct: 259 VTKIVAALKGAEQKSREAELEAERARKAMAE-AEVARKDAEAKGEAILSAVSRLEVVMEQ 317

Query: 617 QSSSTSELASAIENIAAVADE 637
            SSS++ELA+ +E  +  A+E
Sbjct: 318 LSSSSTELAAQVEQASRGAEE 338