Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2
Score = 105 bits (261), Expect = 6e-27
Identities = 84/353 (23%), Positives = 168/353 (47%), Gaps = 38/353 (10%)
Query: 4 KKHITTSASSSFSPSNHSTSANAPKKEAD----DLRRQARTLARKQQAAERVASATAELL 59
+K+ +++ + N ST N KK+ + +L + L R ++ +E+VA A +++
Sbjct: 140 RKYNALQVTTNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVA 199
Query: 60 AGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILT 119
+ S+ +L+ +Q+ +E +S+ T ++ V+ A ++ ++
Sbjct: 200 TAAADQSA---KLQDVSDQLEATSEITSAVTDAADDTVTA--------AIEIEENSEMGV 248
Query: 120 KLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNL 179
K ++ ++ I ++ N+ K + EL ++ KIN+ + +A+QT L
Sbjct: 249 KKVENAIETMQSITNVIENLG----------KAIQELGNESKKINEVTVLIKDVAEQTGL 298
Query: 180 LALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKS 239
LALNA+IEA RAG GKGFAVVA +++LAE+ +K+ +I I ++ E + S
Sbjct: 299 LALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGIS 358
Query: 240 SSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQA 299
+ + V VN I+ + + + A+ + ALK S+ ++
Sbjct: 359 GKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIASI 418
Query: 300 AQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSEEVA 352
++E +A EE S ++Q ++ ++E+ D + +I KSSE+++
Sbjct: 419 SEEFAATAEELTASAEEQ----------SRIMNEIDDAIE---EITKSSEQIS 458
Score = 103 bits (257), Expect = 2e-26
Identities = 77/311 (24%), Positives = 159/311 (51%), Gaps = 38/311 (12%)
Query: 338 LRTSTDIVKS---SEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGI 394
L+ D+V++ SE+VA AA +++ + + ++ L S + + + +
Sbjct: 175 LKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTDAADDTV 234
Query: 395 TSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMA 454
T+ +IE+ + +G ++ E++++ + +T + EN KA E NE
Sbjct: 235 TAAIEIEENSEMGVKKVENAIETMQS-ITNVIENLG-------------KAIQELGNE-- 278
Query: 455 NIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAE 514
S++I+++ I +V+ QT +LA+N ++EAARAG+ GKGFAVV+++I++LA + +
Sbjct: 279 -----SKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKK 333
Query: 515 NAEQIKDQVKNIQEQI------NIVRKDLADILSTVMEEAQKAALTIKQ-LDNVRSRMSD 567
+ E I + + ++ I KD D ++E A L IK+ ++ +++
Sbjct: 334 SVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINS 393
Query: 568 VVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASA 627
+ + ++R + +E ++ D+ Q IA+ +EE + E +A +QS +E+ A
Sbjct: 394 IKVNAER---AVNNVETALKDS----QDIASISEEFAATAEELTASAEEQSRIMNEIDDA 446
Query: 628 IENIAAVADEL 638
IE I ++++
Sbjct: 447 IEEITKSSEQI 457
Score = 33.1 bits (74), Expect = 3e-05
Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 24 ANAPKKEADDLRRQARTLARKQQAAERVASATAEL-LAGLEESSSAMTQLRSSMEQIAVG 82
A+ K A+++++ + R R AT +L ++G +E +++ +
Sbjct: 321 ASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDE-----------VDKGVIA 369
Query: 83 AEESSSA---TKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNV 139
+E + A K+S S+ N I A A + + K QDI ++ + +
Sbjct: 370 IDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEEL 429
Query: 140 QTSSERQ-------NDSVKRMIELSEQAAK 162
S+E Q +D+++ + + SEQ +K
Sbjct: 430 TASAEEQSRIMNEIDDAIEEITKSSEQISK 459
Score = 28.1 bits (61), Expect = 0.001
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 19/157 (12%)
Query: 498 FAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKA-----A 552
F V +D + L D + + K V N +++ + K L T+ +
Sbjct: 89 FKTVISDFEKLKKDE-NSLKTYKKDVSNTFSELHTIFKSLEQGDFTIRANTDRKYNALQV 147
Query: 553 LTIKQLDNVRSRMSDV----------VLGSKRISESAGGIERSIADARAGMQQIATAAEE 602
T + NV + ++D+ +L +K A +ADA + Q+ATAA +
Sbjct: 148 TTNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAAS---QVATAAAD 204
Query: 603 SSHATGEAATAARQQSSSTSELASAIENIAAVADELQ 639
S + + S TS + A ++ A E++
Sbjct: 205 QSAKLQDVSDQLEATSEITSAVTDAADDTVTAAIEIE 241