Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., methyl-accepting chemotaxis sensory transducer from Marinobacter adhaerens HP15

 Score =  114 bits (285), Expect = 1e-29
 Identities = 87/292 (29%), Positives = 146/292 (50%), Gaps = 27/292 (9%)

Query: 25  NAPKKEADDLRRQARTLARKQQAAERV---ASATAELLAGLEESSSAMTQLRSSMEQIAV 81
           N   + A+ +R  +RT A   Q A RV   A+A +E +A   E S    Q+  +M Q+  
Sbjct: 389 NMTDRIAELIRSVSRTTADVDQQATRVNDTAAANSEAVARQMEESG---QINEAMNQMVE 445

Query: 82  GAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQT 141
              E           V++  + + + A+ A Q  +    +  D V+  NK+   +S    
Sbjct: 446 AVHE-----------VTESAHRVADSASNAEQDTETGRGVVADTVETINKLAGEISG--- 491

Query: 142 SSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVV 201
                  +V+ +  +S+ +  I+  + ++  IA+QTNLLALNAAIEA RAG+ G+GFAVV
Sbjct: 492 -------AVEVINRVSKDSDNISQVLVEIKAIAEQTNLLALNAAIEAARAGEQGRGFAVV 544

Query: 202 ADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLI 261
           AD VR+L+++  K+   IE +I  + +G +   + + +S    E+ VQK   V + L  I
Sbjct: 545 ADEVRSLSQRTHKSTEEIEGMISRLQSGVKDAVSAMTNSRDVTEATVQKSGEVTEALDRI 604

Query: 262 RNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKS 313
              +  +V  S  + +AA+E S+ A       E + +   + +A  EE+L S
Sbjct: 605 AKGISVIVDMSHQIAQAAEEQSAVAKNVNSNVEQIGELGHKTAANAEETLGS 656



 Score = 88.2 bits (217), Expect = 1e-21
 Identities = 64/291 (21%), Positives = 128/291 (43%), Gaps = 21/291 (7%)

Query: 339 RTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLT 398
           RT+ D+ + +  V   A   S  +      S +I  A+NQ+      + +S      S +
Sbjct: 403 RTTADVDQQATRVNDTAAANSEAVARQMEESGQINEAMNQMVEAVHEVTESAHRVADSAS 462

Query: 399 QIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIER 458
             EQ    G+     +++   K+   I                    A E +N    + +
Sbjct: 463 NAEQDTETGRGVVADTVETINKLAGEIS------------------GAVEVINR---VSK 501

Query: 459 ISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQ 518
            S  I +++  I  ++ QT +LA+N A+EAARAGE G+GFAVV+ ++++L+    ++ E+
Sbjct: 502 DSDNISQVLVEIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLSQRTHKSTEE 561

Query: 519 IKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISES 578
           I+  +  +Q  +      + +         QK+    + LD +   +S +V  S +I+++
Sbjct: 562 IEGMISRLQSGVKDAVSAMTNSRDVTEATVQKSGEVTEALDRIAKGISVIVDMSHQIAQA 621

Query: 579 AGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIE 629
           A        +  + ++QI     +++    E   ++R+ S  T+ L   +E
Sbjct: 622 AEEQSAVAKNVNSNVEQIGELGHKTAANAEETLGSSREMSQLTASLQRLVE 672



 Score = 58.9 bits (141), Expect = 7e-13
 Identities = 65/345 (18%), Positives = 140/345 (40%), Gaps = 20/345 (5%)

Query: 33  DLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQ 92
           D   +AR  +   Q    V +  A LL  +         +R+++ + +  A   ++    
Sbjct: 310 DSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMT 369

Query: 93  SETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKR 152
           +  ++   +  + E  T        + +L + +      +++  + V  ++   +++V R
Sbjct: 370 THISLRNRDE-LGELTTEFNNMTDRIAELIRSVSRTTADVDQQATRVNDTAAANSEAVAR 428

Query: 153 MIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGK-GFAVVADTVRTLAEK 211
            +   E++ +IN+A+ Q++    +    A   A  A  A +  + G  VVADTV T    
Sbjct: 429 QM---EESGQINEAMNQMVEAVHEVTESAHRVADSASNAEQDTETGRGVVADTVET---- 481

Query: 212 AEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKD 271
                  I  L  +IS   E+++   K S   ++  V+   +  +   L  N  ++  + 
Sbjct: 482 -------INKLAGEISGAVEVINRVSKDSDNISQVLVEIKAIAEQTNLLALNAAIEAARA 534

Query: 272 SEV---LLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAA 328
            E        ADE+ S +    K +E +        +  ++++ ++   +   +  V  +
Sbjct: 535 GEQGRGFAVVADEVRSLSQRTHKSTEEIEGMISRLQSGVKDAVSAMTNSRDVTEATVQKS 594

Query: 329 QSLDELTDELRTSTD-IVKSSEEVAAAAEELSAGIEEINRSSNEI 372
             + E  D +      IV  S ++A AAEE SA  + +N +  +I
Sbjct: 595 GEVTEALDRIAKGISVIVDMSHQIAQAAEEQSAVAKNVNSNVEQI 639



 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 96/482 (19%), Positives = 186/482 (38%), Gaps = 45/482 (9%)

Query: 196 KGFAVVADTVRT--LAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHV 253
           K  A+++ T+    L + A +    I  L++D    A  V    KS    A  E Q G+ 
Sbjct: 156 KAQALLSATIEISGLGQGASRENQLILGLVQDSLPAARTVIGRAKSYGIFALVEGQVGYA 215

Query: 254 VNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSE-SVSQAAQEQSAACEESLK 312
           +++ L    NE+ D + +   LL  A  ++S A  AL     +  Q   E      + L 
Sbjct: 216 LSETL----NEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLD 271

Query: 313 -----------------SLDQQQIA-LDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAA 354
                             L   Q+A  D   TAA S+ +     R  ++I +    V A 
Sbjct: 272 LNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVAL 331

Query: 355 AEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESS 414
              L   +         +  A+N+ S  A+++A    T   SL   ++   L  E    +
Sbjct: 332 IAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMT 391

Query: 415 LKACEKMLTGIEENKTTVDEMILAITESTKAATENL-NEMANIERISRQIDKIVDGISNV 473
            +  E ++  +      VD+    + ++  A +E +  +M    +I+  ++++V+ +  V
Sbjct: 392 DRIAE-LIRSVSRTTADVDQQATRVNDTAAANSEAVARQMEESGQINEAMNQMVEAVHEV 450

Query: 474 SIQTAMLAVNGAVEAARAGEYGKGFAVVSTD--------------IQNLANDAAENAEQI 519
           + ++A    + A  A +  E G+G    + +              + N  +  ++N  Q+
Sbjct: 451 T-ESAHRVADSASNAEQDTETGRGVVADTVETINKLAGEISGAVEVINRVSKDSDNISQV 509

Query: 520 KDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESA 579
             ++K I EQ N++  + A   +   E+ +  A+     D VRS        ++ I    
Sbjct: 510 LVEIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVA---DEVRSLSQRTHKSTEEIEGMI 566

Query: 580 GGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQ 639
             ++  + DA + M       E +   +GE   A  + +   S +      IA  A+E  
Sbjct: 567 SRLQSGVKDAVSAMTNSRDVTEATVQKSGEVTEALDRIAKGISVIVDMSHQIAQAAEEQS 626

Query: 640 SI 641
           ++
Sbjct: 627 AV 628