Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., chemotaxis protein from Herbaspirillum seropedicae SmR1

 Score =  516 bits (1328), Expect = e-150
 Identities = 284/639 (44%), Positives = 428/639 (66%)

Query: 3   LKKHITTSASSSFSPSNHSTSANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGL 62
           +KK+I + +++SF  ++ +       +EA+  R++ARTLA++QQAAER+A+AT EL +G+
Sbjct: 4   VKKNIPSLSAASFHDNDANRKGGVSVREAEAQRKRARTLAKQQQAAERIAAATGELSSGI 63

Query: 63  EESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLE 122
            E++SA  QLR +  QI+ GAEE+S A ++S +A   +   I  Q   A  S+  +   +
Sbjct: 64  NEAASAAEQLRRAANQISAGAEEASGAAQESTSAFHLVTESIGIQLQSAEVSESKVNACQ 123

Query: 123 QDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLAL 182
             I   ++ +  +++NV  + +RQ  SV  + EL  QA+ I D VK V  IADQTNLLAL
Sbjct: 124 LVITSTSSDVANLIANVTVAGQRQQGSVAMVSELEAQASNIGDIVKAVARIADQTNLLAL 183

Query: 183 NAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQ 242
           NAAIEA RAGKHGKGFAVVAD VRTLAE +E++A  I+ L+  I    + ++ G+ +S++
Sbjct: 184 NAAIEAARAGKHGKGFAVVADEVRTLAETSERSAKQIQDLVGQIQQDVKSIAEGINNSAR 243

Query: 243 KAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQE 302
              +EV+ G V+  QL  I  +  ++ +    +   A +  +AA  A+KGS+ ++ AA +
Sbjct: 244 VLGAEVENGKVITAQLERIGVDFREIARGVVEISAGAKQSDTAAQQAMKGSQDIAAAALQ 303

Query: 303 QSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGI 362
           Q+AA EE+ K++ +Q  AL  A  AAQ+L E+ +EL+ STD+ KS+E VA++AE+LS+ +
Sbjct: 304 QAAAAEETAKTVSEQSQALAEAEQAAQALAEVAEELKNSTDVAKSAEVVASSAEQLSSAV 363

Query: 363 EEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKML 422
           EEINR+S +IMGAL +IS GAQ  A + E   T++ QIE+G  + ++RA  S +  + + 
Sbjct: 364 EEINRASAQIMGALEEISKGAQVAAAASEESSTAIGQIEKGVEVAQQRATVSGEKVKGIQ 423

Query: 423 TGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAV 482
           + +  NK  V  +I  I  S KA  +++ ++ +++++SR+IDKIV+ I+ VSIQT MLAV
Sbjct: 424 SLLITNKEAVGSLIDGIATSVKATQDSIKQVRDLDQVSRRIDKIVEAITTVSIQTNMLAV 483

Query: 483 NGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILS 542
           NG+VEAARAGE+GKGF VVSTDI+NLA D+AENA++IKD VK +Q+QI +V  DL DI+ 
Sbjct: 484 NGSVEAARAGEFGKGFVVVSTDIRNLARDSAENADRIKDLVKAVQDQIALVSADLEDIVK 543

Query: 543 TVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEE 602
             + EA+KA  T   L  + + +++V  G+  I  ++G I  +I  A+ G+ QIA+AA+E
Sbjct: 544 AALSEAEKAKTTTANLAQIEADVAEVERGAAAILAASGEISTAIGQAKKGVDQIASAAQE 603

Query: 603 SSHATGEAATAARQQSSSTSELASAIENIAAVADELQSI 641
           +  A GEAA AA QQS    ELA+AIE I+++ADELQS+
Sbjct: 604 AEKAAGEAAGAAEQQSKGARELAAAIEEISSLADELQSV 642



 Score = 76.3 bits (186), Expect = 4e-18
 Identities = 103/489 (21%), Positives = 203/489 (41%), Gaps = 41/489 (8%)

Query: 33  DLRRQARTLARKQQAAERVASAT--AELLAGLEESSSAMTQLRSSM--EQIAVGAEESSS 88
           +L  QA  +    +A  R+A  T    L A +E + +       ++  +++   AE S  
Sbjct: 156 ELEAQASNIGDIVKAVARIADQTNLLALNAAIEAARAGKHGKGFAVVADEVRTLAETSER 215

Query: 89  ATKQSETAVSQM-----------NNFINEQATYATQSKQILTKLEQ---DIVDVANKINE 134
           + KQ +  V Q+           NN            K I  +LE+   D  ++A  + E
Sbjct: 216 SAKQIQDLVGQIQQDVKSIAEGINNSARVLGAEVENGKVITAQLERIGVDFREIARGVVE 275

Query: 135 MVSNVQTSSERQNDSVKRMIELS----------EQAAKINDAVKQVIHIADQTNLLALNA 184
           + +  + S      ++K   +++          E+ AK      Q +  A+Q        
Sbjct: 276 ISAGAKQSDTAAQQAMKGSQDIAAAALQQAAAAEETAKTVSEQSQALAEAEQAAQALAEV 335

Query: 185 AIEAGRAGKHGKGFAVVADTVRTLA---EKAEKNAANIESLIKDISNGAEMVSNGVKSSS 241
           A E   +    K   VVA +   L+   E+  + +A I   +++IS GA++ +   + SS
Sbjct: 336 AEELKNSTDVAKSAEVVASSAEQLSSAVEEINRASAQIMGALEEISKGAQVAAAASEESS 395

Query: 242 QKAESEVQKGHVVNKQLTLIRNEMVD-----LVKDSEVLLKAADEMSS---AAVIALKGS 293
             A  +++KG  V +Q   +  E V      L+ + E +    D +++   A   ++K  
Sbjct: 396 T-AIGQIEKGVEVAQQRATVSGEKVKGIQSLLITNKEAVGSLIDGIATSVKATQDSIKQV 454

Query: 294 ESVSQAAQEQSAACEE-SLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSEEVA 352
             + Q ++      E  +  S+    +A++G+V AA++ +     +  STDI   + + A
Sbjct: 455 RDLDQVSRRIDKIVEAITTVSIQTNMLAVNGSVEAARAGEFGKGFVVVSTDIRNLARDSA 514

Query: 353 AAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAE 412
             A+ +   ++ +      +   L  I   A   A+  +T   +L QIE      +  A 
Sbjct: 515 ENADRIKDLVKAVQDQIALVSADLEDIVKAALSEAEKAKTTTANLAQIEADVAEVERGAA 574

Query: 413 SSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISN 472
           + L A  ++ T I + K  VD++  A  E+ KAA E         + +R++   ++ IS+
Sbjct: 575 AILAASGEISTAIGQAKKGVDQIASAAQEAEKAAGEAAGAAEQQSKGARELAAAIEEISS 634

Query: 473 VSIQTAMLA 481
           ++ +   +A
Sbjct: 635 LADELQSVA 643