Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  125 bits (315), Expect = 5e-33
 Identities = 98/337 (29%), Positives = 153/337 (45%), Gaps = 12/337 (3%)

Query: 3   LKKHITTSASSSFSPSNHSTSANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGL 62
           L++ I T+   +      S +A    + A++ RRQA    R     E +  A   L   +
Sbjct: 353 LREMIATAEQKTSEAEAQSLAAQEATRVAEEARRQAEGARR-----EGLLDAAGRLEGIV 407

Query: 63  EESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLE 122
              +SA  QL + +EQ + GA+     + ++ TA+ +M   + E A  A+++ +   K  
Sbjct: 408 MRVTSASEQLAAQVEQSSRGADLQRERSAEAATAMEEMTATVIEVARNASEASESADKAR 467

Query: 123 QDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLAL 182
           Q   D A  +  MV  + T   +  +    +  L E+A  I   +  +  IADQTNLLAL
Sbjct: 468 QQATDGAGVVLSMVEAIGTVDAQTGELRGSLGTLGERAEGIGQIMTVISDIADQTNLLAL 527

Query: 183 NAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQ 242
           NAAIEA RAG  G+GFAVVAD VR LAEK       +   ++ I NG      G++ +S 
Sbjct: 528 NAAIEAARAGDAGRGFAVVADEVRKLAEKTMNATREVGEAVRAIQNGTRDSIAGMEQASM 587

Query: 243 KAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQE 302
                 +   +    L  I    V+   D    +  A E  SAA      SE +S+  +E
Sbjct: 588 SVGRSNELAGLAGAALQRIVT-FVEASADQVRSIATASEEQSAA------SEQISRGTEE 640

Query: 303 QSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELR 339
            +    E+  ++ Q   A+      AQ L +L + L+
Sbjct: 641 VNRIAAETADAMRQSAQAVTELAAMAQELQQLIERLK 677



 Score = 99.8 bits (247), Expect = 4e-25
 Identities = 98/411 (23%), Positives = 187/411 (45%), Gaps = 43/411 (10%)

Query: 230 AEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIA 289
           ++ +  GV+ ++  A  ++ +   +N+      +E+  L      ++K   EM + A   
Sbjct: 309 SQALGEGVRFATDVAAGDLSRDINLNRN-----DELGQLASALTTMVKRLREMIATAEQK 363

Query: 290 LKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSE 349
              +E+ S AAQE +   EE+ +  +  +   +G + AA  L+ +         +  +SE
Sbjct: 364 TSEAEAQSLAAQEATRVAEEARRQAEGAR--REGLLDAAGRLEGIVMR------VTSASE 415

Query: 350 EVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKE 409
           ++AA  E+ S G +     S E   A+ ++++                T IE  AR   E
Sbjct: 416 QLAAQVEQSSRGADLQRERSAEAATAMEEMTA----------------TVIEV-ARNASE 458

Query: 410 RAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDG 469
            +ES+ KA ++   G       V  M+ AI        E    +  +   +  I +I+  
Sbjct: 459 ASESADKARQQATDGAG----VVLSMVEAIGTVDAQTGELRGSLGTLGERAEGIGQIMTV 514

Query: 470 ISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQ 529
           IS+++ QT +LA+N A+EAARAG+ G+GFAVV+ +++ LA        ++ + V+ IQ  
Sbjct: 515 ISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMNATREVGEAVRAIQ-- 572

Query: 530 INIVRKDLADILSTVMEEAQKAALTIKQLDNVR-SRMSDVVLGSKRISESAGGIERSIAD 588
            N  R  +A      ME+A  +     +L  +  + +  +V   +  ++    I  +  +
Sbjct: 573 -NGTRDSIAG-----MEQASMSVGRSNELAGLAGAALQRIVTFVEASADQVRSIATASEE 626

Query: 589 ARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQ 639
             A  +QI+   EE +    E A A RQ + + +ELA+  + +  + + L+
Sbjct: 627 QSAASEQISRGTEEVNRIAAETADAMRQSAQAVTELAAMAQELQQLIERLK 677



 Score = 60.1 bits (144), Expect = 3e-13
 Identities = 74/373 (19%), Positives = 154/373 (41%), Gaps = 63/373 (16%)

Query: 62  LEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKL 121
           L + +SA+T +   + ++   AE+ +S  +    A  +      E    A  +++     
Sbjct: 339 LGQLASALTTMVKRLREMIATAEQKTSEAEAQSLAAQEATRVAEEARRQAEGARR----- 393

Query: 122 EQDIVDVANKINEMVSNVQTSSER---QNDSVKRMIEL-----SEQAAKINDAVKQVIHI 173
            + ++D A ++  +V  V ++SE+   Q +   R  +L     +E A  + +    VI +
Sbjct: 394 -EGLLDAAGRLEGIVMRVTSASEQLAAQVEQSSRGADLQRERSAEAATAMEEMTATVIEV 452

Query: 174 ADQTNLLALNAAIEAGRAGKHGKGFAV---------------VADTVRTLAEKAEKNAAN 218
           A   +  A  +A +A +    G G  +               +  ++ TL E+AE     
Sbjct: 453 ARNASE-ASESADKARQQATDGAGVVLSMVEAIGTVDAQTGELRGSLGTLGERAE-GIGQ 510

Query: 219 IESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKA 278
           I ++I DI++   +++      + +A  +  +G  V                        
Sbjct: 511 IMTVISDIADQTNLLALNAAIEAARA-GDAGRGFAV-----------------------V 546

Query: 279 ADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIAL----DGAVTAAQSLDEL 334
           ADE+   A   +  +  V +A +       +S+  ++Q  +++    + A  A  +L  +
Sbjct: 547 ADEVRKLAEKTMNATREVGEAVRAIQNGTRDSIAGMEQASMSVGRSNELAGLAGAALQRI 606

Query: 335 TDELRTSTDIVKS----SEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSV 390
              +  S D V+S    SEE +AA+E++S G EE+NR + E   A+ Q +     +A   
Sbjct: 607 VTFVEASADQVRSIATASEEQSAASEQISRGTEEVNRIAAETADAMRQSAQAVTELAAMA 666

Query: 391 ETGITSLTQIEQG 403
           +     + +++QG
Sbjct: 667 QELQQLIERLKQG 679



 Score = 32.3 bits (72), Expect = 7e-05
 Identities = 21/106 (19%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 25  NAPKKEADDLRRQARTLARKQQAAERVASATAELLAGLEESS-------SAMTQLRSSME 77
           N  +     + + + ++ R  + A    +A   ++  +E S+       +A  +  ++ E
Sbjct: 573 NGTRDSIAGMEQASMSVGRSNELAGLAGAALQRIVTFVEASADQVRSIATASEEQSAASE 632

Query: 78  QIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQ 123
           QI+ G EE +    ++  A+ Q    + E A  A + +Q++ +L+Q
Sbjct: 633 QISRGTEEVNRIAAETADAMRQSAQAVTELAAMAQELQQLIERLKQ 678