Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  139 bits (351), Expect = 3e-37
 Identities = 109/340 (32%), Positives = 164/340 (48%), Gaps = 18/340 (5%)

Query: 3   LKKHITTSASSSFSPSNHSTSANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGL 62
           LK  I  +   S         A     EA++ RRQA     ++  AE +  A  +L   +
Sbjct: 256 LKAKIAEADEKSEQARRKEQEAQQATLEAEEARRQA-----ERAKAEGMLQAAVKLEGVV 310

Query: 63  EESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLE 122
           E  SSA  +L + +EQ   GAEE +    ++ TA+ +MN  + E A  A Q+  I     
Sbjct: 311 EVLSSASEELSAQIEQSDRGAEEQARRVGETATAMEEMNATVLEVARNAGQAADIAENTR 370

Query: 123 QDIVDVANKINEMVSNVQTSSERQNDSVKR---MIELSEQAAKINDAVKQVIHIADQTNL 179
           +     A  +  +V+ +   SE Q+ SV     M +L  QA  I   +  +  IADQTNL
Sbjct: 371 RKAESGAEIVGRVVTGI---SEVQSQSVALKHDMEDLGRQAEAIGQIMNVISDIADQTNL 427

Query: 180 LALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKS 239
           LALNAAIEA RAG+ G+GFAVVAD VR LAEK  +    + + I+ +  G     + V  
Sbjct: 428 LALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMQATTEVGNAIRGVQGGTRKNMDNVDR 487

Query: 240 SSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQA 299
           S +  E   Q   +  + L  I  +MVD V D    +  A E  SAA      SE ++++
Sbjct: 488 SVKTIEEATQAARLSGEALREI-VKMVDTVSDQVRGIATASEQQSAA------SEEINKS 540

Query: 300 AQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELR 339
            ++ SA   E+ +++ +   A+      +Q L  L D+L+
Sbjct: 541 VEQVSAISAETAQAMREAATAVQELANQSQVLKRLVDDLK 580



 Score =  117 bits (294), Expect = 1e-30
 Identities = 132/607 (21%), Positives = 273/607 (44%), Gaps = 80/607 (13%)

Query: 39  RTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVS 98
           + LA+ Q    R+     + +   +  +SA+  + S++E++    ++S+   ++  +  S
Sbjct: 48  KILAKMQGDMNRIRRQQLQHIIATD--ASAIASIESNIEKLKQQLQDSARIYEKLVSDPS 105

Query: 99  QMNNFIN-----EQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRM 153
           +  NF        Q   A      L+++ +++   A   +E+  + Q +     D++   
Sbjct: 106 ERGNFEKFLDHTRQYYRAMDKGMELSRVNKNVEAAALDRSEIRGHFQAAM----DALYAA 161

Query: 154 IELSEQAAKINDA-VKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKA 212
           +E++++ +  + A    V+  A   +++ +  AI  G     G G  +V  T+  L E  
Sbjct: 162 VEINDKGSAQSAAEATNVVSSARTFSIVLVLVAIAIGA----GAGVYIVRGTMAQLGE-- 215

Query: 213 EKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDS 272
             +   +  + ++I++G   +     S  Q   S VQ                 D+V   
Sbjct: 216 --DPGYLYDVSREIASGNLDIHFRESSHRQGVYSAVQ-----------------DMVTTL 256

Query: 273 EVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLD 332
           +  +  ADE S  A           Q AQ+ +   EE+ +  ++ +   +G + AA  L+
Sbjct: 257 KAKIAEADEKSEQA-------RRKEQEAQQATLEAEEARRQAERAKA--EGMLQAAVKLE 307

Query: 333 ELTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVET 392
            + + L             ++A+EELSA IE+ +R + E    + + ++  + M  +V  
Sbjct: 308 GVVEVL-------------SSASEELSAQIEQSDRGAEEQARRVGETATAMEEMNATVLE 354

Query: 393 GITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNE 452
              +  Q    A   + +AES  +   +++TGI E             +S   A ++  +
Sbjct: 355 VARNAGQAADIAENTRRKAESGAEIVGRVVTGISE------------VQSQSVALKH--D 400

Query: 453 MANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDA 512
           M ++ R +  I +I++ IS+++ QT +LA+N A+EAARAGE G+GFAVV+ +++ LA   
Sbjct: 401 MEDLGRQAEAIGQIMNVISDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKT 460

Query: 513 AENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGS 572
            +   ++ + ++ +Q        ++   + T+ E  Q A L+ + L  +  +M D V   
Sbjct: 461 MQATTEVGNAIRGVQGGTRKNMDNVDRSVKTIEEATQAARLSGEALREI-VKMVDTV--- 516

Query: 573 KRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIA 632
              S+   GI  +     A  ++I  + E+ S  + E A A R+ +++  ELA+  + + 
Sbjct: 517 ---SDQVRGIATASEQQSAASEEINKSVEQVSAISAETAQAMREAATAVQELANQSQVLK 573

Query: 633 AVADELQ 639
            + D+L+
Sbjct: 574 RLVDDLK 580



 Score = 60.1 bits (144), Expect = 3e-13
 Identities = 68/359 (18%), Positives = 156/359 (43%), Gaps = 31/359 (8%)

Query: 67  SAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIV 126
           SA+  + ++++     A+E S   ++ E    Q      E    A ++K       + ++
Sbjct: 247 SAVQDMVTTLKAKIAEADEKSEQARRKEQEAQQATLEAEEARRQAERAKA------EGML 300

Query: 127 DVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAI 186
             A K+  +V  + ++SE  +  +++    +E+ A+    V +     ++ N   L  A 
Sbjct: 301 QAAVKLEGVVEVLSSASEELSAQIEQSDRGAEEQAR---RVGETATAMEEMNATVLEVAR 357

Query: 187 EAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAES 246
            AG+A       A +A+  R  AE   +    + + I ++ + +  + + ++   ++AE+
Sbjct: 358 NAGQA-------ADIAENTRRKAESGAEIVGRVVTGISEVQSQSVALKHDMEDLGRQAEA 410

Query: 247 EVQKGHVVNK---QLTLIR-NEMVDLVKDSEV---LLKAADEMSSAAVIALKGSESVSQA 299
             Q  +V++    Q  L+  N  ++  +  E        ADE+   A   ++ +  V  A
Sbjct: 411 IGQIMNVISDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMQATTEVGNA 470

Query: 300 AQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSEE-VAAAAEEL 358
            +       +++ ++D+    ++ A  AA+   E   E+    D V      +A A+E+ 
Sbjct: 471 IRGVQGGTRKNMDNVDRSVKTIEEATQAARLSGEALREIVKMVDTVSDQVRGIATASEQQ 530

Query: 359 SAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKA 417
           SA  EEIN+S       + Q+S+ +   A+++    T++ ++   +++ K   +   +A
Sbjct: 531 SAASEEINKS-------VEQVSAISAETAQAMREAATAVQELANQSQVLKRLVDDLKRA 582