Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  110 bits (275), Expect = 2e-28
 Identities = 78/274 (28%), Positives = 140/274 (51%), Gaps = 39/274 (14%)

Query: 95  TAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMI 154
           TAV++M+  + E A+ A  +   +TK+    ++  N + + V+++Q  SE    +V  + 
Sbjct: 304 TAVNEMSAAVREVASNALHTATEITKVNDQTIEGKNILTQSVNHIQQLSESVKQAVAVIE 363

Query: 155 ELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEK 214
           +LS  +A I   +  +  IA+QTNLLALNAAIEA RAG+ G+GFAVVAD VRTLA + E 
Sbjct: 364 KLSVNSANIASVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTET 423

Query: 215 NAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEV 274
           +  +I+ +I+++  G   V++ VKS    A                + N  V L   ++ 
Sbjct: 424 STQDIQRMIEELQRG---VNDAVKSIESGAS---------------LTNSTVTLASQTQ- 464

Query: 275 LLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDEL 334
              A DE+ ++     + S   + A +EQ+   EE                   ++L EL
Sbjct: 465 --DALDEILNSTSKVSEMSTQTATATEEQTHVTEE-----------------INRNLTEL 505

Query: 335 TDELRTSTDIVKSSEEVAAAAEELSAGIE-EINR 367
           +D+ R    +++ ++++    + + + ++ E++R
Sbjct: 506 SDKTRYCNTVIQETQQIVVNTQTICSNLQKEVSR 539



 Score = 86.7 bits (213), Expect = 3e-21
 Identities = 86/426 (20%), Positives = 171/426 (40%), Gaps = 49/426 (11%)

Query: 243 KAESEVQKGHVVNKQLTLIR----NEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQ 298
           +A SEV    V N    L R    N+     K    +  AA E +   V  L    S   
Sbjct: 126 QASSEVINA-VKNNDFELARQLHENKSKKEFKALRSIYNAAGEAADNRVKELDLQASEQA 184

Query: 299 AAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTD---------IVKSSE 349
             Q Q +    +L ++    IA  G      ++ ++TD +    D          +   +
Sbjct: 185 TTQTQISVTIATLVAIVALVIAYFGPKIIVNAIRDITDRINDIVDGDGNLTQRIPITRQD 244

Query: 350 EVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKS--------------VETGIT 395
           E+   A   +  + ++ +    I+     +S   +++A                V+T +T
Sbjct: 245 EIGELANAFNLFVAQLQQMVIAIISQTKDVSQTVENLATKSTTTIGISYEQEQFVDTIVT 304

Query: 396 SLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMAN 455
           ++ ++    R     A  +     K+     E K  + + +  I + +++  + +  +  
Sbjct: 305 AVNEMSAAVREVASNALHTATEITKVNDQTIEGKNILTQSVNHIQQLSESVKQAVAVIEK 364

Query: 456 IERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAEN 515
           +   S  I  ++D I +++ QT +LA+N A+EAARAGE G+GFAVV+ +++ LA+    +
Sbjct: 365 LSVNSANIASVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTETS 424

Query: 516 AEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRI 575
            + I+  ++ +Q  +N       D + ++   A     T+      +  + +++  + ++
Sbjct: 425 TQDIQRMIEELQRGVN-------DAVKSIESGASLTNSTVTLASQTQDALDEILNSTSKV 477

Query: 576 SESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVA 635
           SE +               Q ATA EE +H T E      + S  T    + I+    + 
Sbjct: 478 SEMS--------------TQTATATEEQTHVTEEINRNLTELSDKTRYCNTVIQETQQIV 523

Query: 636 DELQSI 641
              Q+I
Sbjct: 524 VNTQTI 529