Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 178 a.a., Positive regulator of CheA protein activity (CheW) from Pseudomonas fluorescens FW300-N2E2

 Score = 82.8 bits (203), Expect = 9e-21
 Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 7/154 (4%)

Query: 368 DMQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRKR 427
           + Q + F L  E F I I  ++EII    N++ VP    F+ GVINLRG V+P+VD+  R
Sbjct: 17  EAQYLTFMLGTEMFAIGILCIKEIIEYG-NLTVVPMMPTFVRGVINLRGAVVPVVDLSAR 75

Query: 428 FHLPEMARHERQRILVVNFEKI-----STGFIVDSVSEVLRIPESQLEDAPVLSEE-QAQ 481
           F  P  A   R  ++++            G +VD+VS VL IP SQ+E  P    + +A 
Sbjct: 76  FGRPNSAISRRSCVVIIEASSADGQAQDIGLLVDTVSAVLEIPASQIEPPPSFGAKIRAD 135

Query: 482 LMRQMVNLSPRMIGVLSADQLISNTEMYKLHMAA 515
            +  M  +  + + VL  D+++S  EM +L  A+
Sbjct: 136 FISGMAKVDGKFVIVLEVDRVLSIDEMSQLAEAS 169



 Score = 68.9 bits (167), Expect = 1e-16
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 7/161 (4%)

Query: 15  ENLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLRT 74
           E   QY+ FMLG E+FA+ +  ++EII       VP+ P+++ G+ NLRG ++PV+ L  
Sbjct: 15  EEEAQYLTFMLGTEMFAIGILCIKEIIEYGNLTVVPMMPTFVRGVINLRGAVVPVVDLSA 74

Query: 75  LLCMDRTSATEATRVIVITIGKT-----KIGFTVDRVVNVATPDPEMIKPTNTAGGKIDP 129
                 ++ +  + V++I           IG  VD V  V       I+P  + G KI  
Sbjct: 75  RFGRPNSAISRRSCVVIIEASSADGQAQDIGLLVDTVSAVLEIPASQIEPPPSFGAKIRA 134

Query: 130 TLITNTIHSDNQIIQVLNCHRLLDNSVEEELELSTQRFNHL 170
             I+     D + + VL   R+L  S++E  +L+    N L
Sbjct: 135 DFISGMAKVDGKFVIVLEVDRVL--SIDEMSQLAEASPNAL 173



 Score = 65.1 bits (157), Expect = 2e-15
 Identities = 42/160 (26%), Positives = 85/160 (53%), Gaps = 4/160 (2%)

Query: 188 EDMRQLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSLR 247
           E+  Q +  M+  + +A  +   +EI+    + T VP+  + + GVINLRG  +P+V L 
Sbjct: 15  EEEAQYLTFMLGTEMFAIGILCIKEIIEYGNL-TVVPMMPTFVRGVINLRGAVVPVVDLS 73

Query: 248 TLFGLPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPEIMSKMG 307
             FG P+ + S    V+++  S ++ +   +G++VD V  V+ +    ++  P   +K+ 
Sbjct: 74  ARFGRPNSAISRRSCVVIIEASSADGQAQDIGLLVDTVSAVLEIPASQIEPPPSFGAKI- 132

Query: 308 QANDISAICNLDDGRRTLSVISVEQLFDAQIVDQFSEAYP 347
           +A+ IS +  +D   + + V+ V+++     + Q +EA P
Sbjct: 133 RADFISGMAKVDG--KFVIVLEVDRVLSIDEMSQLAEASP 170