Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 161 a.a., Positive regulator of CheA protein activity (CheW) from Pseudomonas fluorescens FW300-N2E2

 Score = 99.4 bits (246), Expect = 8e-26
 Identities = 53/144 (36%), Positives = 93/144 (64%), Gaps = 2/144 (1%)

Query: 369 MQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRKRF 428
           +Q V FKLD E +GI++  VQE++R  E I+ VP    ++ G+INLRGNV+ ++D R+RF
Sbjct: 16  LQWVTFKLDNETYGINVMRVQEVLRYTE-IAPVPGAPSYVLGIINLRGNVVTVIDTRQRF 74

Query: 429 HLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAP-VLSEEQAQLMRQMV 487
            L      +  RI+++  +K   G +VDSV+EV+ + +S++E AP V +EE A+ ++ + 
Sbjct: 75  GLMNAEISDNTRIVIIEADKQVVGIMVDSVAEVVYLRQSEIETAPNVGNEESAKFIQGVC 134

Query: 488 NLSPRMIGVLSADQLISNTEMYKL 511
           N +  ++ ++  D+++S  E  +L
Sbjct: 135 NKNNELLILVELDKMMSEEEWSEL 158



 Score = 73.2 bits (178), Expect = 6e-18
 Identities = 37/148 (25%), Positives = 73/148 (49%)

Query: 14  EENLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLR 73
           E+ + Q+V F L +E + +++  V+E++R      VP  PSY++G+ NLRG ++ V+  R
Sbjct: 12  EDPILQWVTFKLDNETYGINVMRVQEVLRYTEIAPVPGAPSYVLGIINLRGNVVTVIDTR 71

Query: 74  TLLCMDRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTLIT 133
               +     ++ TR+++I   K  +G  VD V  V       I+     G +     I 
Sbjct: 72  QRFGLMNAEISDNTRIVIIEADKQVVGIMVDSVAEVVYLRQSEIETAPNVGNEESAKFIQ 131

Query: 134 NTIHSDNQIIQVLNCHRLLDNSVEEELE 161
              + +N+++ ++   +++      ELE
Sbjct: 132 GVCNKNNELLILVELDKMMSEEEWSELE 159



 Score = 71.6 bits (174), Expect = 2e-17
 Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 7/140 (5%)

Query: 178 DVIDEERDDDEDMRQLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLR 237
           D    ++  ++ + Q V   +D + Y   +   QE++R  EI   VP   S +LG+INLR
Sbjct: 3   DKASSQKGSEDPILQWVTFKLDNETYGINVMRVQEVLRYTEI-APVPGAPSYVLGIINLR 61

Query: 238 GKTLPLVSLRTLFGLPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMD 297
           G  + ++  R  FGL +   SD+ R++++     E ++  VG++VD+V EV+ L    ++
Sbjct: 62  GNVVTVIDTRQRFGLMNAEISDNTRIVII-----EADKQVVGIMVDSVAEVVYLRQSEIE 116

Query: 298 SVPEIMSKMGQANDISAICN 317
           + P + ++   A  I  +CN
Sbjct: 117 TAPNVGNE-ESAKFIQGVCN 135