Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 159 a.a., Chemotaxis signal transduction protein from Pseudomonas stutzeri RCH2

 Score = 95.5 bits (236), Expect = 1e-24
 Identities = 50/144 (34%), Positives = 93/144 (64%), Gaps = 2/144 (1%)

Query: 369 MQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRKRF 428
           +Q V F+LD E +GI++  VQE++R  E I+ VP    ++ G+INLRGNV+ ++D R+RF
Sbjct: 14  LQWVTFRLDNETYGINVMQVQEVLRYTE-IAPVPGAPSYVLGIINLRGNVVTVIDTRQRF 72

Query: 429 HLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAP-VLSEEQAQLMRQMV 487
            L      +  RI+++  ++   G +VDSV+EV+ + +S++E AP V ++E A+ ++ + 
Sbjct: 73  GLDTAPVSDNTRIVIIEADRQVIGIMVDSVAEVVYLRQSEIETAPNVGNDESAKFIQGVC 132

Query: 488 NLSPRMIGVLSADQLISNTEMYKL 511
           N +  ++ ++  D+++S  E  +L
Sbjct: 133 NKNGELLILVELDKMMSEEEWAEL 156



 Score = 72.4 bits (176), Expect = 1e-17
 Identities = 37/148 (25%), Positives = 73/148 (49%)

Query: 14  EENLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLR 73
           E+ + Q+V F L +E + +++ +V+E++R      VP  PSY++G+ NLRG ++ V+  R
Sbjct: 10  EDPVLQWVTFRLDNETYGINVMQVQEVLRYTEIAPVPGAPSYVLGIINLRGNVVTVIDTR 69

Query: 74  TLLCMDRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTLIT 133
               +D    ++ TR+++I   +  IG  VD V  V       I+     G       I 
Sbjct: 70  QRFGLDTAPVSDNTRIVIIEADRQVIGIMVDSVAEVVYLRQSEIETAPNVGNDESAKFIQ 129

Query: 134 NTIHSDNQIIQVLNCHRLLDNSVEEELE 161
              + + +++ ++   +++      ELE
Sbjct: 130 GVCNKNGELLILVELDKMMSEEEWAELE 157



 Score = 69.7 bits (169), Expect = 7e-17
 Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 7/131 (5%)

Query: 187 DEDMRQLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSL 246
           ++ + Q V   +D + Y   +   QE++R  EI   VP   S +LG+INLRG  + ++  
Sbjct: 10  EDPVLQWVTFRLDNETYGINVMQVQEVLRYTEI-APVPGAPSYVLGIINLRGNVVTVIDT 68

Query: 247 RTLFGLPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPEIMSKM 306
           R  FGL +   SD+ R++++     E +R  +G++VD+V EV+ L    +++ P +    
Sbjct: 69  RQRFGLDTAPVSDNTRIVII-----EADRQVIGIMVDSVAEVVYLRQSEIETAPNV-GND 122

Query: 307 GQANDISAICN 317
             A  I  +CN
Sbjct: 123 ESAKFIQGVCN 133