Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 164 a.a., purine-binding chemotaxis protein CheW (RefSeq) from Shewanella amazonensis SB2B

 Score =  100 bits (249), Expect = 4e-26
 Identities = 58/162 (35%), Positives = 100/162 (61%), Gaps = 3/162 (1%)

Query: 351 TDMSTIDDVSILEDDNTDMQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEG 410
           TD   +  V+  +DD   +Q V F+LD E +GI++  VQE++R  E I+ VP    ++ G
Sbjct: 2   TDSRNVAAVAAGKDDAV-LQWVTFRLDNETYGINVMQVQEVLRYTE-IAPVPGAPHYVLG 59

Query: 411 VINLRGNVLPIVDMRKRFHLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLE 470
           +INLRGNV+ ++D R RF L      +  RI+++  EK   G +VDSV+EV+ +  S+++
Sbjct: 60  IINLRGNVVTVIDTRSRFGLQPAEVDDSTRIVIIEAEKQVIGILVDSVAEVVYLRRSEID 119

Query: 471 DAP-VLSEEQAQLMRQMVNLSPRMIGVLSADQLISNTEMYKL 511
           +AP V +EE A+ ++ + N    ++ ++  D+L+S+ E  +L
Sbjct: 120 NAPNVGTEESAKFIQGVSNRDNELLILVDLDKLLSDEEWAEL 161



 Score = 71.2 bits (173), Expect = 2e-17
 Identities = 38/147 (25%), Positives = 74/147 (50%)

Query: 14  EENLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLR 73
           ++ + Q+V F L +E + +++ +V+E++R      VP  P Y++G+ NLRG ++ V+  R
Sbjct: 15  DDAVLQWVTFRLDNETYGINVMQVQEVLRYTEIAPVPGAPHYVLGIINLRGNVVTVIDTR 74

Query: 74  TLLCMDRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTLIT 133
           +   +      ++TR+++I   K  IG  VD V  V       I      G +     I 
Sbjct: 75  SRFGLQPAEVDDSTRIVIIEAEKQVIGILVDSVAEVVYLRRSEIDNAPNVGTEESAKFIQ 134

Query: 134 NTIHSDNQIIQVLNCHRLLDNSVEEEL 160
              + DN+++ +++  +LL +    EL
Sbjct: 135 GVSNRDNELLILVDLDKLLSDEEWAEL 161



 Score = 68.9 bits (167), Expect = 1e-16
 Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 7/134 (5%)

Query: 187 DEDMRQLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSL 246
           D+ + Q V   +D + Y   +   QE++R  EI   VP     +LG+INLRG  + ++  
Sbjct: 15  DDAVLQWVTFRLDNETYGINVMQVQEVLRYTEI-APVPGAPHYVLGIINLRGNVVTVIDT 73

Query: 247 RTLFGLPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPEIMSKM 306
           R+ FGL      DS R++++     E E+  +G++VD+V EV+ L    +D+ P + ++ 
Sbjct: 74  RSRFGLQPAEVDDSTRIVII-----EAEKQVIGILVDSVAEVVYLRRSEIDNAPNVGTE- 127

Query: 307 GQANDISAICNLDD 320
             A  I  + N D+
Sbjct: 128 ESAKFIQGVSNRDN 141