Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., CheW protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  359 bits (921), Expect = e-103
 Identities = 202/498 (40%), Positives = 312/498 (62%), Gaps = 8/498 (1%)

Query: 16  NLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLRTL 75
           N  Q+V F + ++LFA+ + EV+EIIR+P    VPL+P+ L GL+NLRG +LPV+ LR +
Sbjct: 31  NARQFVIFHVDNDLFAVPLSEVQEIIRMPDVVCVPLSPAALEGLANLRGSVLPVIRLRHV 90

Query: 76  LCMDRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTLITNT 135
             M      +ATRV+V+  G+  +G  VDRV NV + + + I+P+   GG +D  L+T  
Sbjct: 91  FGMAPVVHDDATRVVVLDQGRP-VGLVVDRVANVVSVEADHIEPSGAIGGTVDTDLLTGM 149

Query: 136 IHSDNQ--IIQVLNCHRLLDNSVEEELELSTQRFNHLSSQSHFGDVIDEERDDDEDMRQL 193
           I  D    ++ +L+  +++    E +   S      L       D   +   D +D  QL
Sbjct: 150 IKGDGDRAMVMILDAAKVVAR--EFQAIGSAPLAPSLGEAGRAEDGRVQAATDGDDESQL 207

Query: 194 VCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSLRTLFGLP 253
           V   V GQEYA P+E  QEIV+IP +IT VP T + +LGV+ LR + LPLV LR +FGLP
Sbjct: 208 VSFEVAGQEYALPIERVQEIVQIPGLITDVPNTPAHVLGVMTLRNRLLPLVGLREMFGLP 267

Query: 254 SISFSDSHRVLVVNISLSEK-ERLPVGVVVDAVREVIRLHVDVMDSVPEIMSKMGQANDI 312
           +++ +++++++VV++          VGVV+D+V+EV+R+   ++D +P ++++ G   +I
Sbjct: 268 TLALTETNKIVVVSLEGGAGGSGRSVGVVMDSVKEVLRVGHALIDPMPALLARTGNLGEI 327

Query: 313 SAICNLDDGRRTLSVISVEQLFDAQIVDQFSEAYPQEGTDMSTIDDVSILEDDNTDMQLV 372
            AIC L  G R +S++S + +F++  +   +     E   ++  +    L   + + Q V
Sbjct: 328 EAICRLQGGNRLVSILSADAMFNSDEIRAVAANALGEEDAVADEETPGYLGTTDDEEQFV 387

Query: 373 IFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRKRFHLPE 432
            F+L  EE+G+ I +VQEI+R+PE ++RVPKT DFIEGV+NLRG VLP+VD R+RF LP 
Sbjct: 388 AFRLMNEEYGVPIDSVQEIVRVPEELTRVPKTPDFIEGVVNLRGVVLPVVDQRRRFGLPG 447

Query: 433 MARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAPVLSEEQAQLMRQMVNL--S 490
           M R++RQRI+V     + TGFIVDSVSEV+RIP S +  APVLS+EQ +L+R++ N+   
Sbjct: 448 MERNDRQRIMVYTIRGVRTGFIVDSVSEVIRIPASLIGPAPVLSDEQQRLIRRVANIEKQ 507

Query: 491 PRMIGVLSADQLISNTEM 508
            RMI +L  +QL+   E+
Sbjct: 508 KRMILLLDVEQLLDGKEL 525