Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 156 a.a., chemotaxis protein CheW from Rhodopseudomonas palustris CGA009

 Score = 72.8 bits (177), Expect = 8e-18
 Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 7/150 (4%)

Query: 355 TIDDVSILEDDNTDMQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINL 414
           TID +S         Q     +  + FG+ I  VQ++  +PE ++RVP   D + GV+NL
Sbjct: 4   TIDAIS-----GNTTQFATAMIGGQLFGLPISRVQDVF-MPERLTRVPLAPDDVAGVLNL 57

Query: 415 RGNVLPIVDMRKRFHLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAPV 474
           RG ++  +DMR R  LP+    +    + V+    S G ++DS+ EVL +P+   E  PV
Sbjct: 58  RGRIVTAIDMRARLGLPKNQDGKPPMAMGVDLRGESYGLLIDSIGEVLTLPDEGRETNPV 117

Query: 475 -LSEEQAQLMRQMVNLSPRMIGVLSADQLI 503
            L    A     +  L  +++ VL  D+++
Sbjct: 118 NLDPRMASFANGVHRLDGQLMVVLDVDKVL 147



 Score = 57.8 bits (138), Expect = 3e-13
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 14/154 (9%)

Query: 16  NLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLRTL 75
           N TQ+   M+G +LF L +  V+++        VPL P  + G+ NLRG+I+  + +R  
Sbjct: 11  NTTQFATAMIGGQLFGLPISRVQDVFMPERLTRVPLAPDDVAGVLNLRGRIVTAIDMRAR 70

Query: 76  LCMDRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTL--IT 133
           L + +    +    + + +     G  +D +  V T  P+  + TN     +DP +    
Sbjct: 71  LGLPKNQDGKPPMAMGVDLRGESYGLLIDSIGEVLTL-PDEGRETNPV--NLDPRMASFA 127

Query: 134 NTIHS-DNQIIQVLNCHRLLDNSVEEELELSTQR 166
           N +H  D Q++ VL+        V++ LE++TQR
Sbjct: 128 NGVHRLDGQLMVVLD--------VDKVLEIATQR 153



 Score = 53.9 bits (128), Expect = 4e-12
 Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 192 QLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSLRTLFG 251
           Q    M+ GQ +  P+   Q++  +PE +T+VPL    + GV+NLRG+ +  + +R   G
Sbjct: 14  QFATAMIGGQLFGLPISRVQDVF-MPERLTRVPLAPDDVAGVLNLRGRIVTAIDMRARLG 72

Query: 252 LPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRL 291
           LP     D    + + + L  +     G+++D++ EV+ L
Sbjct: 73  LP--KNQDGKPPMAMGVDLRGES---YGLLIDSIGEVLTL 107