Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 162 a.a., chemotaxis protein CheW from Rhodopseudomonas palustris CGA009

 Score = 66.2 bits (160), Expect = 8e-16
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 370 QLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRKRFH 429
           Q +   L  E FG++I  V+EI+ +   ISR+P   +F+ G+I++RG   PI+D+R +  
Sbjct: 6   QYLTLGLAGETFGMAIRNVREILDM-RPISRLPHAPEFMLGMIDVRGTGYPILDLRLKLD 64

Query: 430 LPEMARHERQRILVVNF----EKISTGFIVDSVSEVLRIPESQLEDAP 473
           LP +   E  RI++++       +  GF+ D V EV  I ES LE  P
Sbjct: 65  LPAVPPTEATRIIILDVPVAGRVVGVGFVADCVYEVTDIEESSLEQVP 112



 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 4/138 (2%)

Query: 19  QYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLRTLLCM 78
           QY+   L  E F + ++ V EI+ +     +P  P +++G+ ++RG   P+L LR  L +
Sbjct: 6   QYLTLGLAGETFGMAIRNVREILDMRPISRLPHAPEFMLGMIDVRGTGYPILDLRLKLDL 65

Query: 79  DRTSATEATRVIVITI---GK-TKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTLITN 134
                TEATR+I++ +   G+   +GF  D V  V   +   ++     GGK     I  
Sbjct: 66  PAVPPTEATRIIILDVPVAGRVVGVGFVADCVYEVTDIEESSLEQVPDVGGKWKSDYIAG 125

Query: 135 TIHSDNQIIQVLNCHRLL 152
                ++ + + +  RL+
Sbjct: 126 IGRKGDRFVIIFDLARLM 143



 Score = 50.4 bits (119), Expect = 4e-11
 Identities = 26/106 (24%), Positives = 62/106 (58%), Gaps = 2/106 (1%)

Query: 200 GQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSLRTLFGLPSISFSD 259
           G+ +   + + +EI+ +  I +++P     +LG+I++RG   P++ LR    LP++  ++
Sbjct: 14  GETFGMAIRNVREILDMRPI-SRLPHAPEFMLGMIDVRGTGYPILDLRLKLDLPAVPPTE 72

Query: 260 SHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPEIMSK 305
           + R++++++ ++ +  + VG V D V EV  +    ++ VP++  K
Sbjct: 73  ATRIIILDVPVAGRV-VGVGFVADCVYEVTDIEESSLEQVPDVGGK 117