Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 164 a.a., CheW protein (RefSeq) from Shewanella loihica PV-4

 Score =  102 bits (255), Expect = 8e-27
 Identities = 58/161 (36%), Positives = 100/161 (62%), Gaps = 3/161 (1%)

Query: 352 DMSTIDDVSILEDDNTDMQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGV 411
           D   +  V+  +DD   +Q V F+LD E +GI++  VQE++R  E I+ VP    ++ G+
Sbjct: 3   DAKNVAAVAAGKDDEV-LQWVTFRLDNETYGINVMQVQEVLRYTE-IAPVPGAPHYVLGI 60

Query: 412 INLRGNVLPIVDMRKRFHLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLED 471
           INLRGNV+ ++D R RF LP     +  RI+++  EK   G +VDSV+EV+ +  S++++
Sbjct: 61  INLRGNVVTVIDTRSRFGLPSAEVDDSTRIVIIEAEKQVIGILVDSVAEVVYLRGSEIDN 120

Query: 472 AP-VLSEEQAQLMRQMVNLSPRMIGVLSADQLISNTEMYKL 511
           AP V +EE A+ ++ + N    ++ ++  D+L+S+ E  +L
Sbjct: 121 APNVGTEESAKFIQGVSNRDNELLILVDLDKLLSDEEWMEL 161



 Score = 75.5 bits (184), Expect = 1e-18
 Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 7/134 (5%)

Query: 187 DEDMRQLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSL 246
           D+++ Q V   +D + Y   +   QE++R  EI   VP     +LG+INLRG  + ++  
Sbjct: 15  DDEVLQWVTFRLDNETYGINVMQVQEVLRYTEI-APVPGAPHYVLGIINLRGNVVTVIDT 73

Query: 247 RTLFGLPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPEIMSKM 306
           R+ FGLPS    DS R++++     E E+  +G++VD+V EV+ L    +D+ P + ++ 
Sbjct: 74  RSRFGLPSAEVDDSTRIVII-----EAEKQVIGILVDSVAEVVYLRGSEIDNAPNVGTE- 127

Query: 307 GQANDISAICNLDD 320
             A  I  + N D+
Sbjct: 128 ESAKFIQGVSNRDN 141



 Score = 73.2 bits (178), Expect = 6e-18
 Identities = 41/150 (27%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 14  EENLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLR 73
           ++ + Q+V F L +E + +++ +V+E++R      VP  P Y++G+ NLRG ++ V+  R
Sbjct: 15  DDEVLQWVTFRLDNETYGINVMQVQEVLRYTEIAPVPGAPHYVLGIINLRGNVVTVIDTR 74

Query: 74  TLLCMDRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTLIT 133
           +   +      ++TR+++I   K  IG  VD V  V       I      G +     I 
Sbjct: 75  SRFGLPSAEVDDSTRIVIIEAEKQVIGILVDSVAEVVYLRGSEIDNAPNVGTEESAKFIQ 134

Query: 134 NTIHSDNQIIQVLNCHRLLDNSVEEELELS 163
              + DN+++ +++  +LL  S EE +EL+
Sbjct: 135 GVSNRDNELLILVDLDKLL--SDEEWMELA 162