Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 185 a.a., CheW protein (RefSeq) from Shewanella loihica PV-4

 Score = 82.8 bits (203), Expect = 9e-21
 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 13/179 (7%)

Query: 353 MSTIDDVSIL---EDDNTDMQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIE 409
           M+  D+  I    +DD +D  L     D EE+G+ I +VQEI R  E  + +P +   ++
Sbjct: 1   MTQADEAGITLTAKDDASDQYLTFIMAD-EEYGVDILSVQEI-RGWEPTTVIPNSPSHVK 58

Query: 410 GVINLRGNVLPIVDMRKRFHLPEMARHERQRILVVNF----EKISTGFIVDSVSEVLRIP 465
           GVINLRG ++PI+D+R+RF +  +       ++V+      E    G +VD+VS+V  + 
Sbjct: 59  GVINLRGTIVPIIDLRQRFGIASLDYGPTTVVIVIKVCVGDEHKVIGIVVDAVSDVFSVH 118

Query: 466 ESQLEDAPVLSEE-QAQLMRQMVNLSPRMIGVLSADQLISN---TEMYKLHMAANDMDS 520
              L DAP   EE     ++ + NL+ +M+ +L  D L+S+    E  +L    N++D+
Sbjct: 119 HRDLRDAPDFGEETDLTFIKGLANLADKMVILLDIDTLLSSEVLPEAAQLSNIINNIDA 177



 Score = 70.1 bits (170), Expect = 6e-17
 Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 12/162 (7%)

Query: 186 DDEDMRQLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVS 245
           DD   + L   M D +EY   +   QEI R  E  T +P + S + GVINLRG  +P++ 
Sbjct: 15  DDASDQYLTFIMAD-EEYGVDILSVQEI-RGWEPTTVIPNSPSHVKGVINLRGTIVPIID 72

Query: 246 LRTLFGLPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPEIMSK 305
           LR  FG+ S+ +  +  V+V+ + + ++ ++ +G+VVDAV +V  +H   +   P+    
Sbjct: 73  LRQRFGIASLDYGPTTVVIVIKVCVGDEHKV-IGIVVDAVSDVFSVHHRDLRDAPD---- 127

Query: 306 MGQAND---ISAICNLDDGRRTLSVISVEQLFDAQIVDQFSE 344
            G+  D   I  + NL D  + + ++ ++ L  ++++ + ++
Sbjct: 128 FGEETDLTFIKGLANLAD--KMVILLDIDTLLSSEVLPEAAQ 167



 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 4/160 (2%)

Query: 19  QYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLRTLLCM 78
           QY+ F++ DE + + +  V+EI     T  +P +PS++ G+ NLRG I+P++ LR    +
Sbjct: 20  QYLTFIMADEEYGVDILSVQEIRGWEPTTVIPNSPSHVKGVINLRGTIVPIIDLRQRFGI 79

Query: 79  DRTSATEATRVIVITI----GKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTLITN 134
                   T VIVI +        IG  VD V +V +     ++     G + D T I  
Sbjct: 80  ASLDYGPTTVVIVIKVCVGDEHKVIGIVVDAVSDVFSVHHRDLRDAPDFGEETDLTFIKG 139

Query: 135 TIHSDNQIIQVLNCHRLLDNSVEEELELSTQRFNHLSSQS 174
             +  ++++ +L+   LL + V  E    +   N++ + S
Sbjct: 140 LANLADKMVILLDIDTLLSSEVLPEAAQLSNIINNIDAAS 179