Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 164 a.a., purine-binding chemotaxis protein CheW (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  101 bits (251), Expect = 2e-26
 Identities = 55/149 (36%), Positives = 95/149 (63%), Gaps = 2/149 (1%)

Query: 365 DNTDMQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDM 424
           D+  +Q V FKLD E +GI++  VQE++R  E I+ VP    ++ G+INLRGNV+ ++D 
Sbjct: 15  DDAVLQWVTFKLDNETYGINVMQVQEVLRYTE-IAPVPGAPHYVLGIINLRGNVVTVIDT 73

Query: 425 RKRFHLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAP-VLSEEQAQLM 483
           R RF L      +  RI+++  EK   G +VDSV+EV+ +  S++++AP V +EE A+ +
Sbjct: 74  RSRFGLQSAEVDDSTRIVIIEAEKQVIGILVDSVAEVVYLRRSEIDNAPNVGTEESAKFI 133

Query: 484 RQMVNLSPRMIGVLSADQLISNTEMYKLH 512
           + + N    ++ ++  D+L+S+ E  +L+
Sbjct: 134 QGVSNRDNELLILVDLDKLLSDEEWAELN 162



 Score = 71.6 bits (174), Expect = 2e-17
 Identities = 38/147 (25%), Positives = 74/147 (50%)

Query: 14  EENLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLR 73
           ++ + Q+V F L +E + +++ +V+E++R      VP  P Y++G+ NLRG ++ V+  R
Sbjct: 15  DDAVLQWVTFKLDNETYGINVMQVQEVLRYTEIAPVPGAPHYVLGIINLRGNVVTVIDTR 74

Query: 74  TLLCMDRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTLIT 133
           +   +      ++TR+++I   K  IG  VD V  V       I      G +     I 
Sbjct: 75  SRFGLQSAEVDDSTRIVIIEAEKQVIGILVDSVAEVVYLRRSEIDNAPNVGTEESAKFIQ 134

Query: 134 NTIHSDNQIIQVLNCHRLLDNSVEEEL 160
              + DN+++ +++  +LL +    EL
Sbjct: 135 GVSNRDNELLILVDLDKLLSDEEWAEL 161



 Score = 70.9 bits (172), Expect = 3e-17
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 7/134 (5%)

Query: 187 DEDMRQLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSL 246
           D+ + Q V   +D + Y   +   QE++R  EI   VP     +LG+INLRG  + ++  
Sbjct: 15  DDAVLQWVTFKLDNETYGINVMQVQEVLRYTEI-APVPGAPHYVLGIINLRGNVVTVIDT 73

Query: 247 RTLFGLPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPEIMSKM 306
           R+ FGL S    DS R++++     E E+  +G++VD+V EV+ L    +D+ P + ++ 
Sbjct: 74  RSRFGLQSAEVDDSTRIVII-----EAEKQVIGILVDSVAEVVYLRRSEIDNAPNVGTE- 127

Query: 307 GQANDISAICNLDD 320
             A  I  + N D+
Sbjct: 128 ESAKFIQGVSNRDN 141