Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 170 a.a., purine-binding chemotaxis protein CheW (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 72.0 bits (175), Expect = 1e-17
 Identities = 37/142 (26%), Positives = 85/142 (59%), Gaps = 2/142 (1%)

Query: 368 DMQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRKR 427
           +++ + F L +E + + I +V+EI R  E ++++     FI+GV+NLRG+++PIVD+R +
Sbjct: 18  EVEFLSFVLGEEHYALDIMSVKEI-RGYEPVTKIANAPSFIKGVLNLRGDIVPIVDLRMK 76

Query: 428 FHLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAPVLSEE-QAQLMRQM 486
           F++  +   E   ++++N      G +VD+VS+V+++    +  AP       ++ ++ +
Sbjct: 77  FNVGTVTYDEFTIVIMLNVCDRIVGIVVDAVSDVIKLSSEAILPAPEFGAAFDSRYLKGL 136

Query: 487 VNLSPRMIGVLSADQLISNTEM 508
             +  +M+ +++   LIS+ ++
Sbjct: 137 ATVDEKMVILVNIQALISSDDL 158



 Score = 66.6 bits (161), Expect = 6e-16
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 7/161 (4%)

Query: 13  HEENLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCL 72
           H+E   ++++F+LG+E +AL +  V+EI        +   PS++ G+ NLRG I+P++ L
Sbjct: 16  HDE--VEFLSFVLGEEHYALDIMSVKEIRGYEPVTKIANAPSFIKGVLNLRGDIVPIVDL 73

Query: 73  RTLLCMDRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTLI 132
           R    +   +  E T VI++ +    +G  VD V +V     E I P    G   D   +
Sbjct: 74  RMKFNVGTVTYDEFTIVIMLNVCDRIVGIVVDAVSDVIKLSSEAILPAPEFGAAFDSRYL 133

Query: 133 TNTIHSDNQIIQVLNCHRLLDNSVEEELELSTQRFNHLSSQ 173
                 D +++ ++N   L+ +      +L     N LS Q
Sbjct: 134 KGLATVDEKMVILVNIQALISSD-----DLGLMDTNSLSEQ 169



 Score = 58.2 bits (139), Expect = 2e-13
 Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 6/101 (5%)

Query: 201 QEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSLRTLFGLPSISFSDS 260
           + YA  +   +EI R  E +TK+    S I GV+NLRG  +P+V LR  F + ++++ + 
Sbjct: 29  EHYALDIMSVKEI-RGYEPVTKIANAPSFIKGVLNLRGDIVPIVDLRMKFNVGTVTYDEF 87

Query: 261 HRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPE 301
             V+++N+     +R+ VG+VVDAV +VI+L  + +   PE
Sbjct: 88  TIVIMLNVC----DRI-VGIVVDAVSDVIKLSSEAILPAPE 123