Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 1977 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  202 bits (514), Expect = 1e-55
 Identities = 108/338 (31%), Positives = 194/338 (57%), Gaps = 18/338 (5%)

Query: 425  RLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDTEADKSIVEDLS 484
            R+  +LQ  +M+ RMVP   +  R  R++R ++++LGK V+ ++   D E D++++E ++
Sbjct: 1498 RINTELQEGLMRTRMVPFERMLPRLKRIVRQVAQELGKDVEFLVGNADGEMDRNVLERMA 1557

Query: 485  EPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKGVDVERVK 544
             PL H++RNA+DHG+E  D+R   GK   G+I+L        +I  + DDG GV +E V+
Sbjct: 1558 APLEHMLRNAVDHGLEPADVRIAAGKPARGRISLDLSREGGDIIFDIRDDGAGVPLEAVR 1617

Query: 545  TKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDAVRTAIERNGGT 604
            +KA++RGL+       +S ++++  I +PGFST E+++ +SGRGVGMD V   + + GG+
Sbjct: 1618 SKAIKRGLLAPD--SDISDRDVLQFILQPGFSTAEKITQISGRGVGMDVVHEEVRQLGGS 1675

Query: 605  LTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIP---IESVIQTL--KISRHKDI 659
            + + S PG+G    + LP ++ ++R +M    +  +AIP   IES+++ L  ++  H  +
Sbjct: 1676 MVIDSTPGQGVHFRIRLPFTVAVNRALMVHCHEDQYAIPLNTIESIVRVLPAELDGHYQL 1735

Query: 660  RRVKNLDTFILRGETVPILYLKRAFEMNS-----AQIYPDIQPILVVRVGDDVLGLAVDR 714
                +  T+   G+   + YL    +  +      Q  P   P+L+V+  +  + + VD 
Sbjct: 1736 ----DPPTYTYAGQRYELCYLGELLKTGARPKLLGQSQP--LPVLLVQCNERHVAVQVDA 1789

Query: 715  LQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLD 752
                +++++K L    +      GA I+GDGRV+L+LD
Sbjct: 1790 TAGTREIVVKSLGPQFSAVQGLSGATILGDGRVVLILD 1827



 Score = 57.8 bits (138), Expect = 6e-12
 Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 8    FIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLAHRME 67
            F+ E++D++ESAA+ L    A+PD+ A ++ L R++HT+KG + + D I P + LA  +E
Sbjct: 1077 FLEEAQDILESAAQALQRWLADPDNGAPLSSLQRDLHTLKGGARMAD-IRPVSDLAQELE 1135

Query: 68   DLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQLAPLT 127
            +L + + D   + +  +  L+    ++  L + +L+Q Q L          +I  +  L 
Sbjct: 1136 NLYEGLVDRRYSYSEELAQLLASSHERLDLLLGQLQQGQPLGDPVA-----LIDAIRRLR 1190

Query: 128  QAAPTHTPTPAVA 140
            Q  P    T A A
Sbjct: 1191 QDKPNAIETSAAA 1203



 Score = 55.1 bits (131), Expect = 4e-11
 Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 16/147 (10%)

Query: 4    IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
            +++ F+ E  D+++S+   LL  +  P ++  +  L R++HT+KG + +++ I P   LA
Sbjct: 1214 LLEIFLEEGFDILDSSGAALLRWQEEPSNRQAVETLLRDLHTLKGGARMVE-IVPIGDLA 1272

Query: 64   HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQL 123
            H +E+L + +  G +     +  L+    D+    ++ +      +     ++ ++IAQ+
Sbjct: 1273 HELENLYEGLSAGLLQPTPALFTLLQSSHDRLAQMLDAVR-----AGHPCPLADRLIAQI 1327

Query: 124  ----------APLTQAAPTHTPTPAVA 140
                      AP   +AP   PTP V+
Sbjct: 1328 QAVNHSQENAAPQAVSAPEPVPTPIVS 1354



 Score = 36.6 bits (83), Expect = 1e-05
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 8   FIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLAHRME 67
           F+ E+ ++++     L    A+PDD   ++EL R  HT+KG SG +       +LA  +E
Sbjct: 634 FLEETGEVLDVLREYLPRWSAHPDDHGALSELRRAFHTLKG-SGRMVRALVLGELAWAVE 692

Query: 68  DLMQKVRDGHVALNGTMLDLM 88
           +L+ +V +  V    ++  L+
Sbjct: 693 NLLNRVLERSVEPQASVRQLV 713



 Score = 32.3 bits (72), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 37  NELFREIHTVKGASGILDNIAPFTQLAHRMEDLMQKVRDGHVALNGTMLDLML 89
           +EL R +HT+KG S  +  + P  +LA  M++L ++ R   +AL+   ++L+L
Sbjct: 801 DELQRALHTLKG-SASMAGVLPIAELAGAMDELAREYRVHLIALDLDEVELLL 852