Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 1980 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2E3

 Score =  223 bits (568), Expect = 8e-62
 Identities = 201/791 (25%), Positives = 368/791 (46%), Gaps = 84/791 (10%)

Query: 4    IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
            I+  F+ E+ D++ESA + L     +P+  A ++ L R++HT+KG + + + + P   LA
Sbjct: 1080 IVSIFLEEAVDILESAGQALQRWLNDPESAAPLSSLQRDLHTLKGGARMAE-VGPVGDLA 1138

Query: 64   HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQL 123
            H +E L + + D   + +  +  L+    D+  + +E+L+ H     + +S    +I  +
Sbjct: 1139 HELESLYEGLVDRRFSHSPALGVLLQQSHDRLAMLLEQLQNH-----QPLSDPGTLIEAI 1193

Query: 124  APLTQAAPTHTPTPAVAAQEETATLSISELTELLGRDCFNDVEALLEHPDALLLIYTPDK 183
                Q   +       A   E A+    EL E+   + F+    +++   A L  +  D 
Sbjct: 1194 QQFRQGTGSTAEVVEAATANEAASHD-PELLEIFLEEGFD----IIDSSGAALSRWQADP 1248

Query: 184  QCFFSGDDPLAWMRSVEKVSWRKVVLIPDSEPFDT----YQAQMQFLLLTQSAKKDLEQQ 239
            Q     +  L  + ++ K   R V + P  +        Y+     LL    A  DL Q+
Sbjct: 1249 QNRQEMETLLRDLHTL-KGGARMVEIAPIGDLAHELEFLYEGLSTGLLHAIPALFDLLQR 1307

Query: 240  ----LAPIEGQYRLYR--IQSDNL---------PTA---PIDQRTQYVERIVKQQIALLR 281
                LA +    R  +  + +D+L         PTA   P       V  + K + A L+
Sbjct: 1308 SHDRLAQMLDATRAGQPVLPADSLIDAIKAFTHPTADKAPTPAPLVEVAPVAKPEAAALQ 1367

Query: 282  EEQVSESVRAGTFL--SIKNLYCALS-------QQISDRPAPLPESVSADELITLFDNIL 332
             +  ++ V+    L   + NL    S       QQ++D    L E  +  E +   D + 
Sbjct: 1368 PDAGADMVKVSAELLDDLVNLAGETSIFRGRIEQQVNDAQVALSEMETTIERMR--DQLR 1425

Query: 333  LSFAHRTAIIDKCENEPAQPSAITVNEQLDKVKKKQIKTLKVDQEKVDLLMDLVGELIVA 392
                     I   +   A+       + L+  +  Q++ L         L +   +L+  
Sbjct: 1426 RLDTETQGRILSRQQVEAERLGYEEFDPLEMDRHSQLQQLS------RALFESASDLLDL 1479

Query: 393  KNSMQYLAYRAENEFGVRKLAQDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRL 452
            K ++++  + AEN          +  +Q    R+  +LQ  +M+ RMVP   +  R  R+
Sbjct: 1480 KETLEHCNHDAEN----------LLQQQG---RINTELQEGLMRSRMVPFERMLPRLKRI 1526

Query: 453  IRDISRKLGKQVDLIIEGEDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNP 512
            +R +S +L K V+ I+   + E D++++E ++ PL H++RNA+DHG+ES ++RR  GK  
Sbjct: 1527 VRQVSSELSKDVEFIVGNAEGEMDRNVLERMAAPLEHMLRNAVDHGLESAEVRRAAGKPE 1586

Query: 513  TGKITLSAFTLDDSVIIKMSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFE 572
             G+ITL        +I  + DDG GV ++ V+ KA++RGL++      MS ++++  I +
Sbjct: 1587 QGRITLDLSREGGDIIFDIRDDGAGVPLDAVRRKAIKRGLLDPG--SDMSDRDVLQFILQ 1644

Query: 573  PGFSTVEQVSDLSGRGVGMDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMM 632
            PGFST E+++ +SGRGVGMD V   + + GG++ + S PG G    + LP +++++R +M
Sbjct: 1645 PGFSTAEKITQISGRGVGMDVVHEEVRQLGGSMVIDSVPGHGVHFRIRLPFTVSVNRALM 1704

Query: 633  FELEQQSFAIP---IESVIQTLKISRHKDIRRVKNLD--TFILRGETVPILYLKRAFEMN 687
             +  +  +AIP   IE ++  L      ++     LD   +   G+   + YL    E+ 
Sbjct: 1705 VQCAEDQYAIPLNTIEGIVCVLPF----ELEGYYQLDPPLYEYAGQRYELCYLG---ELL 1757

Query: 688  SAQIYPDI------QPILVVRVGDDVLGLAVDRLQEGQDVIIKPLEGALATFSIYRGAAI 741
               + P +       P+L+V+  +  + + VD     +++++K L    A      GA I
Sbjct: 1758 KTSVRPKLLGQSLPLPVLLVQCNERRIAVQVDATTGTREIVVKSLGPQFAAVQGLSGATI 1817

Query: 742  MGDGRVLLVLD 752
            +GDGRV+L+LD
Sbjct: 1818 LGDGRVVLILD 1828



 Score = 35.8 bits (81), Expect = 2e-05
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 8   FIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLAHRME 67
           F+ E+ ++++     L    A+PD  ++++EL R  HT+KG SG +       +LA  +E
Sbjct: 640 FLEETDEVLDILREYLPRWVASPDSTSVLSELRRAFHTLKG-SGRMVRALVLGELAWALE 698

Query: 68  DLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEEL 102
           +L+ +V +  V     +  L+    D+ L  + EL
Sbjct: 699 NLLNRVLERSVEPGPPVYQLL----DEVLQLLPEL 729



 Score = 33.1 bits (74), Expect = 1e-04
 Identities = 21/112 (18%), Positives = 51/112 (45%), Gaps = 1/112 (0%)

Query: 4    IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
            ++  F+ +  D++  A   L   + +P ++  ++ L  E+ T+ G +  L ++ P  +L 
Sbjct: 917  LINKFLAQGMDILLDAETLLQRWQQHPGERQELSALLDELTTL-GENAHLADLHPVDELC 975

Query: 64   HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSI 115
              + DL   V +  +A+N           +  +  ++EL   QE+ ++   +
Sbjct: 976  EALLDLYGAVEESSLAVNERFFHEAQSAHEALINMLDELAAGQEVGSQPARV 1027



 Score = 29.3 bits (64), Expect = 0.002
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 37  NELFREIHTVKGASGILDNIAPFTQLAHRMEDLMQKVRDGHVALNGTMLDLML 89
           +EL R +HT+KG S  +  + P  +LA   + L ++ +   +AL+   ++L+L
Sbjct: 808 DELQRALHTLKG-SASMAGVLPIAELAAPFDHLAREYKAHQIALDLDEVELLL 859