Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 723 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2

 Score =  285 bits (729), Expect = 6e-81
 Identities = 154/412 (37%), Positives = 254/412 (61%), Gaps = 19/412 (4%)

Query: 350 AQPSAITVNEQLDKVKKKQIKTLKVDQEKVDLLMDLVGELIVAKNSMQYLAYRAENEFGV 409
           ++P+A+      +K   +   T++VD  ++D +M++VGEL++ +N +  L   + +E   
Sbjct: 322 SKPAAVVA----EKAPAEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGSNSGDEAMA 377

Query: 410 RKLAQDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIE 469
           + ++         +  +  DLQS VM+ RM P+  VF R+PRL+RD++R L K+++L + 
Sbjct: 378 KAVSN--------LDVVTADLQSAVMKTRMQPIKKVFGRFPRLVRDLARSLKKEINLELV 429

Query: 470 GEDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVII 529
           GE+T+ DK++VE L++PLVHL+RNA+DHGIE P+ R   GK  TG++ LSA    D +++
Sbjct: 430 GEETDLDKNLVEALADPLVHLVRNAVDHGIEMPEEREAAGKPRTGRVVLSAEQEGDHILL 489

Query: 530 KMSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGV 589
            +SDDGKG+D   ++ KA+E+G++E    +R+S  E  +LIF PGFST  ++SD+SGRGV
Sbjct: 490 IISDDGKGMDANVLRAKAVEKGMLEKDAADRLSDLECYNLIFAPGFSTKTEISDVSGRGV 549

Query: 590 GMDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQ 649
           GMD V+T I +  GT+ + S  G+GS + + +PL++ I   +M  L  Q+FA P+ +V +
Sbjct: 550 GMDVVKTKISQLNGTVNVFSTKGQGSRVVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNE 609

Query: 650 TLKISRHKDIRRVKNLD---TFILRGETVPILYLKRAFEMNSAQIYPDIQPILVVRVGDD 706
                 H D+ R   +D     I+R + +P+ YLKR    ++A+       ++++ VG+ 
Sbjct: 610 IF----HLDLSRTNVVDGQEVVIVRDKALPLFYLKRWLIQSAAEEEQREGHVVILSVGNQ 665

Query: 707 VLGLAVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVK 758
            +G  VD+L   ++V+IKPL   L       GA I GDGR+ L+LD   ++K
Sbjct: 666 SIGFVVDQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDVPSMLK 717



 Score = 72.4 bits (176), Expect = 8e-17
 Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 4   IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
           I+Q+F++E+ +++E  +  L+ LE++PDD A++N +FR  HTVKG +G L  +    +  
Sbjct: 9   ILQDFLVEAGEILELLSEQLVELESSPDDMALLNAIFRGFHTVKGGAGFL-QLHELVECC 67

Query: 64  HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQL 123
           H  E++   +R G   ++  ++D++L   D     + E+        E    S++++A L
Sbjct: 68  HIAENVFDILRKGERRVDSELMDVVLQALDS----VNEMFGQVRERVEPTPASRELLAAL 123

Query: 124 APLTQAAPTHTPT----PAVAAQEETATLSISELTELLGRDCFNDVE 166
           A L + A    P     PA  A+ +   +  +E  ++L     +D E
Sbjct: 124 ARLAEPASADEPAVPMEPAPVAEPQVEAVD-AEFEQMLAAVQSSDSE 169