Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 1402 a.a., Hpt domain-containing protein from Synechocystis sp000284455 PCC 6803

 Score =  207 bits (527), Expect = 3e-57
 Identities = 123/362 (33%), Positives = 206/362 (56%), Gaps = 24/362 (6%)

Query: 410  RKLAQDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIE 469
            R   Q + A++ ++  L ++L    M  RM+PL  + QR+PRL+RD++ K  K V + + 
Sbjct: 885  RAANQTVDAQKQMLFSLRDEL----MWARMLPLGEILQRFPRLLRDMASKFNKPVQIKLH 940

Query: 470  GEDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVII 529
            G     D+  +E L +PL+HL+RNA DHGIE    R   GK   G I + A+   +  II
Sbjct: 941  GTGVLVDRLALEKLYDPLLHLLRNAFDHGIEDEGTRLAMGKPAMGTIEVHAYHQGNQTII 1000

Query: 530  KMSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGV 589
            +M DDG G++ E++  +A+ERGLV   + +R++ ++I +LIFEP FST +QVS+LSGRGV
Sbjct: 1001 EMRDDGGGLNREKILRRAVERGLVTEEQGQRLTTEQIDNLIFEPNFSTADQVSELSGRGV 1060

Query: 590  GMDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQ-----SFAIPI 644
            G+D VR  ++   GT+ +SS PG+G+  ++ LPL++TI+++++  + Q      + AIP 
Sbjct: 1061 GLDVVRQQLQALKGTIVVSSRPGRGTVFSLRLPLTLTIAKLLVCLVGQNQGAPTAIAIPS 1120

Query: 645  ESVIQTLKISRHKDIRRVKNLDTFILRGETVPILYLKRAF-------EMNSAQIYPDIQ- 696
            +SV + L +     I+          +  T+PI  L +         E  ++++   +  
Sbjct: 1121 DSVAE-LMVPTATQIKTSGGQRFLHWQELTIPIYSLTQLLPYHCPLSEQQTSKLLTTVPQ 1179

Query: 697  ------PILVVRVGDDVLGLAVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLV 750
                  P++++R+G     L V+RL   Q+++IKP    L   S   GA I+ DG ++ V
Sbjct: 1180 PDNWHLPLVLLRLGQQYYALEVNRLVTEQELVIKPFSSLLPAPSYLYGATILADGTLIPV 1239

Query: 751  LD 752
            ++
Sbjct: 1240 VN 1241



 Score = 40.8 bits (94), Expect = 5e-07
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 3   PIMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQL 62
           P  + FI E+  L++    GLL +       A+++ + R  H++KG +  +  +     +
Sbjct: 348 PAYRFFIEEAPTLLQEIETGLLTI-GQDRSAAVVHGIMRAAHSLKGGAASV-GLETIKHI 405

Query: 63  AHRMEDLMQKVRDGHVALNGTMLDLML 89
           AHR+ED+ + +    V L+ TM  L+L
Sbjct: 406 AHRLEDIFKALYSEEVVLDQTMETLLL 432



 Score = 37.0 bits (84), Expect = 7e-06
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 14/167 (8%)

Query: 6   QNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLAHR 65
           Q FI E+ +L+     GLL L       A I+ + R  H++KG +  +  +    +LAHR
Sbjct: 12  QFFIEEAPELLSVIEMGLLELRGERTP-AQIHGIMRAAHSIKGGAASVQ-LPAIEELAHR 69

Query: 66  MEDLMQKVRDGHVALNGTMLDLMLGCCD---QFLLWIEELEQ--HQELSAEAVSISKQMI 120
           +ED+ + +    V ++  +  ++L   D   Q L    E  Q  H E+  + + +   + 
Sbjct: 70  LEDIFKALYSDAVVVDDRLEGMLLEGFDYLKQALTTQIETGQLEHTEVLVQGLPVIAAIE 129

Query: 121 AQLAPLTQAAPTHTPTPAVAAQEETATL-------SISELTELLGRD 160
            QL     A     P+ A    +  A+L        ++E+ E L  D
Sbjct: 130 EQLGEHLAAGEQFLPSSADLGVDIVASLFEVDVAQGLAEIGEALAGD 176